CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67659
CDX72108
CDX74273
CDX76014
CDX91976
CDX95951
CDX98125
CDY04272
CDY07354
CDY08701
CDY10500
CDY16104
CDY27189
CDY33807
CDY36406
CDY40905
CDY43256
CDY47381
CDY51261
CDY68672

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02140.1	CDX98125	AT1G13740.1	18484180
AT3G02140.1	CDY16104	AT1G13740.1	18484180
AT3G02140.1	CDY33807	AT1G13740.1	18484180
AT3G02140.1	CDY36406	AT1G13740.1	18484180
AT3G02140.1	CDX95951	AT1G69260.1	18484180
AT3G02140.1	CDY04272	AT1G69260.1	18484180
AT3G02140.1	CDY07354	AT1G69260.1	18484180
AT3G02140.1	CDY40905	AT1G69260.1	18484180
AT3G02140.1	CDX74273	AT3G02140.1	18484180
AT3G02140.1	CDX91976	AT3G02140.1	18484180
AT3G02140.1	CDY43256	AT3G02140.1	18484180
AT3G02140.1	CDY68672	AT3G02140.1	18484180
AT3G02140.1	CDY08701	AT3G44460.1	18484180
AT3G02140.1	CDY10500	AT3G44460.1	18484180
AT3G02140.1	CDX67659	AT3G56850.1	18484180
AT3G02140.1	CDX72108	AT3G56850.1	18484180
AT3G02140.1	CDX76014	AT3G56850.1	18484180
AT3G02140.1	CDY27189	AT3G56850.1	18484180
AT3G02140.1	CDY47381	AT3G56850.1	18484180
AT3G02140.1	CDY51261	AT3G56850.1	18484180

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039157.1-P	Field mustard	cytosol	97.1	96.75
CDY43256	Canola	mitochondrion	92.03	90.71
CDX91976	Canola	mitochondrion	63.41	61.4
CDX74273	Canola	mitochondrion	59.42	60.07
Solyc02g066850.1.1	Tomato	cytosol	13.77	57.58
AT3G02140.1	Thale cress	cytosol	61.59	53.29
PGSC0003DMT400036544	Potato	cytosol	17.39	37.8
GSMUA_Achr4P32830_001	Banana	nucleus	18.48	37.5
CDY44386	Canola	nucleus	34.06	37.45
CDY04085	Canola	nucleus	33.7	37.35
CDX85274	Canola	nucleus	35.51	36.98
CDX86364	Canola	nucleus	34.78	35.96
CDY00093	Canola	nucleus	32.97	35.83
CDY19988	Canola	nucleus	32.97	35.69
Solyc02g032680.1.1	Tomato	cytosol	15.22	35.0
Solyc02g066860.1.1	Tomato	cytosol	16.3	34.62
HORVU4Hr1G035770.1	Barley	plastid	12.68	31.53
Solyc02g032710.1.1	Tomato	cytosol	14.86	30.37
Solyc02g030610.1.1	Tomato	cytosol	17.03	29.38
PGSC0003DMT400095238	Potato	cytosol, mitochondrion	13.41	29.13
PGSC0003DMT400003712	Potato	nucleus	32.97	28.98
Solyc02g030650.1.1	Tomato	nucleus	18.84	28.89
PGSC0003DMT400089614	Potato	cytosol	14.13	28.68
Solyc02g088910.2.1	Tomato	nucleus	31.88	27.76
Solyc02g066870.1.1	Tomato	cytosol	15.58	27.39
CDY36406	Canola	nucleus	28.62	27.05
CDY16104	Canola	nucleus	30.07	26.86
CDY33807	Canola	nucleus	30.07	26.86
Solyc02g032690.1.1	Tomato	cytosol	23.19	26.67
TraesCS3D01G532000.1	Wheat	nucleus	16.3	26.47
GSMUA_Achr5P01470_001	Banana	nucleus	27.17	26.13
GSMUA_Achr9P09330_001	Banana	nucleus	31.88	26.04
VIT_14s0068g00300.t01	Wine grape	nucleus	35.51	25.32
TraesCS4B01G246800.1	Wheat	nucleus	21.74	24.79
TraesCS3B01G594200.1	Wheat	cytosol	19.93	24.34
CDY04272	Canola	nucleus	30.43	24.28
CDY07354	Canola	nucleus	30.43	24.21
CDX98125	Canola	nucleus	27.9	24.14
TraesCS4A01G058100.1	Wheat	nucleus	21.38	23.98
Solyc01g058740.2.1	Tomato	cytosol	6.16	23.94
KRH01286	Soybean	nucleus	32.25	23.61
Solyc02g030630.1.1	Tomato	cytosol	26.09	23.53
CDX95951	Canola	nucleus	28.62	23.51
CDY40905	Canola	nucleus	29.71	23.5
KRH45047	Soybean	nucleus	32.25	23.24
GSMUA_Achr6P34980_001	Banana	cytosol	23.55	22.97
Solyc02g030620.1.1	Tomato	cytosol	24.28	22.64
TraesCS4D01G246100.2	Wheat	nucleus	20.29	22.31
Solyc02g032670.1.1	Tomato	cytosol	21.01	22.14
CDY08008	Canola	cytosol	22.83	21.95
CDX74054	Canola	nucleus	22.83	21.88
Os03t0214200-01	Rice	nucleus	30.8	21.2
EER92642	Sorghum	nucleus	29.71	20.81
Zm00001d048085_P002	Maize	nucleus	29.35	20.61
CDY34910	Canola	peroxisome	20.65	20.43
TraesCS4D01G246400.1	Wheat	nucleus	27.9	19.44
TraesCS4B01G247000.1	Wheat	nucleus	27.54	19.19
Solyc02g066900.1.1	Tomato	cytosol	21.74	18.93
Solyc02g066840.1.1	Tomato	cytosol	10.14	18.67
EER89528	Sorghum	nucleus	23.91	18.49
HORVU4Hr1G067930.1	Barley	nucleus	26.45	18.07
Solyc02g066890.1.1	Tomato	cytosol	22.83	17.55
TraesCS4A01G057800.1	Wheat	cytosol, mitochondrion, nucleus, plastid	28.99	15.66
Solyc02g032720.1.1	Tomato	cytosol	20.29	15.14
PGSC0003DMT400036545	Potato	nucleus	23.91	13.5
Solyc02g030600.1.1	Tomato	cytosol	9.78	12.92

Protein Annotations

EnsemblPlants:CDY68672	EnsemblPlantsGene:GSBRNA2T00077042001	GO:A0A078JTC4	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	InterPro:Jas	InterPro:Ninja_fam	InterPro:Ninja_motif	PANTHER:PTHR31413	PANTHER:PTHR31413:SF10
PFAM:PF07897	PFAM:PF16135	ProteinID:CDY68672	ProteinID:CDY68672.1	SEG:seg	UniParc:UPI0004EF4A17
UniProt:A0A078JTC4	MapMan:15.5.53.3	:	:	:	:

Description

BnaA05g37500DBnaA05g37500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JTC4]

Coordinates

chrLK037777:-:4254..5084

Molecular Weight (calculated)

30584.4 Da

IEP (calculated)

8.948

GRAVY (calculated)

-0.680

Length

276 amino acids

Sequence
(BLAST)

001: MEMLRARGGT NAVVQVPNLS TNNLLQKFFI ASNLFGHRDS EDREEAKKKD EEDDKDIELT LGLSLNGQFG TDPRSRKRKN SELGRSSSIP EGFIFDGQRS
101: GDVYGGDMRQ TVGRGVSDMF QLDRTRSLPV KTKAETKRKR SEKTMELMAC NAPPPTKEKE EKYCFLVPGP VNGRGKKGNT TNKENQNVSG MEKARYILED
201: MPCVSTRDVG ADGKRVEGFL YWYGGNTEEV KIVCVCHGSF LSPAEFVRHG GGTVSAADVM INPLRHIVVK LPSSSL

Best Arabidopsis Sequence Match ( AT3G02140.1 )
(BLAST)

001: MEMIRGRGIP NGVVQVPNLS ANNLLQKFFI ASNHFCQRDS EHGENQQEAK KREDEAEEDE KDVELTLGLS LNGQFGTDPR SRKRRHFELG RSSSIPEGFV
101: FDEQRSGGGN GGDMRRIVGR GGSDMFQLDR TRSLPVVTEM DIEKERKVSE KTRAFMESPV TNRGAYLTKD KNRGQAVETE KPRAFLEFKI PPTKEGKKEK
201: DRLVVTGPVN GKGKNGNTAK KQKNNVENSG MEKARNILED MPCVSTRDVG ADGKRVEGFL YWYGGNKEEV KIVCVCHGSF LSPAEFVRHG GGTVSDDDGG
301: DVMINPLRHI VVKLPSSSI

Arabidopsis Description

AFP4TMAC2 [Source:UniProtKB/TrEMBL;Acc:A0A178VMX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.