CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67659
CDX72108
CDX74273
CDX76014
CDX91976
CDX95951
CDX98125
CDY04272
CDY07354
CDY08701
CDY10500
CDY16104
CDY27189
CDY33807
CDY36406
CDY40905
CDY43256
CDY47381
CDY51261
CDY68672

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02140.1	CDX98125	AT1G13740.1	18484180
AT3G02140.1	CDY16104	AT1G13740.1	18484180
AT3G02140.1	CDY33807	AT1G13740.1	18484180
AT3G02140.1	CDY36406	AT1G13740.1	18484180
AT3G02140.1	CDX95951	AT1G69260.1	18484180
AT3G02140.1	CDY04272	AT1G69260.1	18484180
AT3G02140.1	CDY07354	AT1G69260.1	18484180
AT3G02140.1	CDY40905	AT1G69260.1	18484180
AT3G02140.1	CDX74273	AT3G02140.1	18484180
AT3G02140.1	CDX91976	AT3G02140.1	18484180
AT3G02140.1	CDY43256	AT3G02140.1	18484180
AT3G02140.1	CDY68672	AT3G02140.1	18484180
AT3G02140.1	CDY08701	AT3G44460.1	18484180
AT3G02140.1	CDY10500	AT3G44460.1	18484180
AT3G02140.1	CDX67659	AT3G56850.1	18484180
AT3G02140.1	CDX72108	AT3G56850.1	18484180
AT3G02140.1	CDX76014	AT3G56850.1	18484180
AT3G02140.1	CDY27189	AT3G56850.1	18484180
AT3G02140.1	CDY47381	AT3G56850.1	18484180
AT3G02140.1	CDY51261	AT3G56850.1	18484180

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74273	Canola	mitochondrion	77.89	81.32
CDY68672	Canola	cytosol, mitochondrion, nucleus, plastid	61.4	63.41
CDY43256	Canola	mitochondrion	60.35	61.43
Solyc02g066850.1.1	Tomato	cytosol	13.33	57.58
AT3G02140.1	Thale cress	cytosol	54.04	48.28
PGSC0003DMT400036544	Potato	cytosol	17.89	40.16
CDY04085	Canola	nucleus	34.04	38.96
CDY44386	Canola	nucleus	33.68	38.25
CDY00093	Canola	nucleus	34.04	38.19
CDY19988	Canola	nucleus	34.04	38.04
GSMUA_Achr4P32830_001	Banana	nucleus	17.89	37.5
CDX85274	Canola	nucleus	34.04	36.6
CDX86364	Canola	nucleus	33.68	35.96
Solyc02g032680.1.1	Tomato	cytosol	15.09	35.83
Solyc02g066860.1.1	Tomato	cytosol	15.79	34.62
Solyc02g032710.1.1	Tomato	cytosol	16.14	34.07
HORVU4Hr1G035770.1	Barley	plastid	12.98	33.33
PGSC0003DMT400095238	Potato	cytosol, mitochondrion	14.04	31.5
Solyc02g066870.1.1	Tomato	cytosol	17.19	31.21
Solyc02g088910.2.1	Tomato	nucleus	34.04	30.6
PGSC0003DMT400003712	Potato	nucleus	33.33	30.25
PGSC0003DMT400089614	Potato	cytosol	14.04	29.41
Solyc02g030610.1.1	Tomato	cytosol	16.49	29.38
CDY16104	Canola	nucleus	31.58	29.13
CDY33807	Canola	nucleus	31.23	28.8
Solyc02g032690.1.1	Tomato	cytosol	23.86	28.33
Solyc02g030650.1.1	Tomato	nucleus	17.89	28.33
GSMUA_Achr9P09330_001	Banana	nucleus	33.33	28.11
CDY36406	Canola	nucleus	28.07	27.4
CDX95951	Canola	nucleus	31.58	26.79
TraesCS3D01G532000.1	Wheat	nucleus	15.79	26.47
Solyc02g030630.1.1	Tomato	cytosol	28.07	26.14
CDY04272	Canola	nucleus	31.58	26.01
VIT_14s0068g00300.t01	Wine grape	nucleus	35.09	25.84
CDX98125	Canola	nucleus	28.77	25.71
GSMUA_Achr5P01470_001	Banana	nucleus	25.26	25.09
TraesCS4A01G058100.1	Wheat	nucleus	21.4	24.8
CDY07354	Canola	nucleus	29.82	24.5
Solyc02g032670.1.1	Tomato	cytosol	22.46	24.43
KRH01286	Soybean	nucleus	32.28	24.4
CDY40905	Canola	nucleus	29.82	24.36
TraesCS3B01G594200.1	Wheat	cytosol	19.3	24.34
TraesCS4B01G246800.1	Wheat	nucleus	20.35	23.97
KRH45047	Soybean	nucleus	31.23	23.24
Solyc02g030620.1.1	Tomato	cytosol	23.86	22.97
TraesCS4D01G246100.2	Wheat	nucleus	20.0	22.71
GSMUA_Achr6P34980_001	Banana	cytosol	22.46	22.61
Solyc01g058740.2.1	Tomato	cytosol	5.61	22.54
Os03t0214200-01	Rice	nucleus	31.23	22.19
CDX74054	Canola	nucleus	22.11	21.88
CDY08008	Canola	cytosol	21.75	21.6
Solyc02g066840.1.1	Tomato	cytosol	11.23	21.33
Solyc02g066900.1.1	Tomato	cytosol	23.51	21.14
Zm00001d048085_P002	Maize	nucleus	28.77	20.87
EER92642	Sorghum	nucleus	28.42	20.56
CDY34910	Canola	peroxisome	18.95	19.35
EER89528	Sorghum	nucleus	24.21	19.33
TraesCS4D01G246400.1	Wheat	nucleus	26.32	18.94
TraesCS4B01G247000.1	Wheat	nucleus	25.96	18.69
HORVU4Hr1G067930.1	Barley	nucleus	26.32	18.56
Solyc02g066890.1.1	Tomato	cytosol	22.81	18.11
Solyc02g032720.1.1	Tomato	cytosol	20.35	15.68
TraesCS4A01G057800.1	Wheat	cytosol, mitochondrion, nucleus, plastid	27.37	15.26
Solyc02g030600.1.1	Tomato	cytosol	10.88	14.83
PGSC0003DMT400036545	Potato	nucleus	23.86	13.91

Protein Annotations

EnsemblPlants:CDX91976	EnsemblPlantsGene:GSBRNA2T00153624001	GO:A0A078DRR5	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	InterPro:Jas	InterPro:Ninja_fam	InterPro:Ninja_motif	PANTHER:PTHR31413	PANTHER:PTHR31413:SF10
PFAM:PF07897	PFAM:PF16135	ProteinID:CDX91976	ProteinID:CDX91976.1	SEG:seg	UniParc:UPI0004EF22B3
MapMan:15.5.53.3	:	:	:	:	:

Description

BnaC03g32780D

Coordinates

chrLK031870:-:1079516..1080373

Molecular Weight (calculated)

31456.0 Da

IEP (calculated)

6.688

GRAVY (calculated)

-0.795

Length

285 amino acids

Sequence
(BLAST)

001: MEMLRARGSS TNGVVQVPNL LGKFFVTSNH FCHRDSEHGE RREEAKKKDE EEEEEEGKDI ELTLGLSLNG QFGTDPRSRK RKNFELARSS SIPEGFVFDG
101: QRSGGDMRQT VERGVSDMFQ LDRTRSLPVE TETEAKRKRP EKTKVQAEEK PFLSFNVPPL PTKEKGEKDG FLVSAPVSGR GENGNTAKKK NQEVSGMEKA
201: RNILEDMPCV STRDVGADGK RVEGFLYWYG GSKEEVKIVC VCHGSFLSPA EFVRHGGGTV SDGGGGDVTS NPLRDIVVKL PSSSL

Best Arabidopsis Sequence Match ( AT3G02140.1 )
(BLAST)

001: MEMIRGRGIP NGVVQVPNLS ANNLLQKFFI ASNHFCQRDS EHGENQQEAK KREDEAEEDE KDVELTLGLS LNGQFGTDPR SRKRRHFELG RSSSIPEGFV
101: FDEQRSGGGN GGDMRRIVGR GGSDMFQLDR TRSLPVVTEM DIEKERKVSE KTRAFMESPV TNRGAYLTKD KNRGQAVETE KPRAFLEFKI PPTKEGKKEK
201: DRLVVTGPVN GKGKNGNTAK KQKNNVENSG MEKARNILED MPCVSTRDVG ADGKRVEGFL YWYGGNKEEV KIVCVCHGSF LSPAEFVRHG GGTVSDDDGG
301: DVMINPLRHI VVKLPSSSI

Arabidopsis Description

AFP4TMAC2 [Source:UniProtKB/TrEMBL;Acc:A0A178VMX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.