Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19988 | Canola | nucleus | 95.28 | 94.9 |
| CDY04085 | Canola | nucleus | 71.65 | 73.09 |
| AT3G29575.1 | Thale cress | nucleus | 66.14 | 72.73 |
| CDY44386 | Canola | nucleus | 71.65 | 72.51 |
| CDX86364 | Canola | nucleus | 75.98 | 72.28 |
| CDX85274 | Canola | nucleus | 74.8 | 71.7 |
| Solyc02g066850.1.1 | Tomato | cytosol | 16.93 | 65.15 |
| GSMUA_Achr4P32830_001 | Banana | nucleus | 30.32 | 56.62 |
| PGSC0003DMT400003712 | Potato | nucleus | 50.79 | 41.08 |
| Solyc02g088910.2.1 | Tomato | nucleus | 50.79 | 40.69 |
| CDY33807 | Canola | nucleus | 48.03 | 39.48 |
| PGSC0003DMT400036544 | Potato | cytosol | 19.68 | 39.37 |
| CDY16104 | Canola | nucleus | 47.64 | 39.16 |
| HORVU4Hr1G035770.1 | Barley | plastid | 16.93 | 38.74 |
| Solyc02g032680.1.1 | Tomato | cytosol | 18.11 | 38.33 |
| CDY36406 | Canola | nucleus | 42.91 | 37.33 |
| GSMUA_Achr9P09330_001 | Banana | nucleus | 49.21 | 36.98 |
| Solyc02g032710.1.1 | Tomato | cytosol | 19.29 | 36.3 |
| KRH01286 | Soybean | nucleus | 53.54 | 36.07 |
| CDX98125 | Canola | nucleus | 45.28 | 36.05 |
| PGSC0003DMT400089614 | Potato | cytosol | 19.29 | 36.03 |
| VIT_14s0068g00300.t01 | Wine grape | nucleus | 54.33 | 35.66 |
| CDX74273 | Canola | mitochondrion | 37.8 | 35.16 |
| KRH45047 | Soybean | nucleus | 52.76 | 34.99 |
| GSMUA_Achr6P34980_001 | Banana | cytosol | 38.98 | 34.98 |
| PGSC0003DMT400095238 | Potato | cytosol, mitochondrion | 17.32 | 34.65 |
| GSMUA_Achr5P01470_001 | Banana | nucleus | 38.98 | 34.49 |
| CDX91976 | Canola | mitochondrion | 38.19 | 34.04 |
| Solyc02g066870.1.1 | Tomato | cytosol | 20.87 | 33.76 |
| CDY04272 | Canola | nucleus | 45.28 | 33.24 |
| CDY07354 | Canola | nucleus | 45.28 | 33.14 |
| Solyc02g066860.1.1 | Tomato | cytosol | 16.93 | 33.08 |
| CDX95951 | Canola | nucleus | 43.7 | 33.04 |
| CDY68672 | Canola | cytosol, mitochondrion, nucleus, plastid | 35.83 | 32.97 |
| Solyc02g032690.1.1 | Tomato | cytosol | 31.1 | 32.92 |
| Solyc02g030650.1.1 | Tomato | nucleus | 22.44 | 31.67 |
| Solyc02g030610.1.1 | Tomato | cytosol | 19.68 | 31.25 |
| CDY43256 | Canola | mitochondrion | 34.25 | 31.07 |
| TraesCS3B01G594200.1 | Wheat | cytosol | 27.56 | 30.97 |
| TraesCS3D01G532000.1 | Wheat | nucleus | 20.08 | 30.0 |
| CDY40905 | Canola | nucleus | 40.94 | 29.8 |
| Solyc02g032670.1.1 | Tomato | cytosol | 29.13 | 28.24 |
| Solyc02g030630.1.1 | Tomato | cytosol | 32.68 | 27.12 |
| Os03t0214200-01 | Rice | nucleus | 42.52 | 26.93 |
| Solyc02g030620.1.1 | Tomato | cytosol | 31.1 | 26.69 |
| TraesCS4B01G246800.1 | Wheat | nucleus | 25.2 | 26.45 |
| TraesCS4A01G058100.1 | Wheat | nucleus | 25.2 | 26.02 |
| EER89528 | Sorghum | nucleus | 36.22 | 25.77 |
| EER92642 | Sorghum | nucleus | 39.76 | 25.63 |
| CDX74054 | Canola | nucleus | 28.74 | 25.35 |
| CDY08008 | Canola | cytosol | 28.35 | 25.09 |
| TraesCS4D01G246100.2 | Wheat | nucleus | 24.02 | 24.3 |
| Zm00001d048085_P002 | Maize | nucleus | 37.4 | 24.17 |
| Solyc01g058740.2.1 | Tomato | cytosol | 6.69 | 23.94 |
| HORVU4Hr1G067930.1 | Barley | nucleus | 37.4 | 23.51 |
| TraesCS4B01G247000.1 | Wheat | nucleus | 36.61 | 23.48 |
| TraesCS4D01G246400.1 | Wheat | nucleus | 36.22 | 23.23 |
| CDY34910 | Canola | peroxisome | 25.2 | 22.94 |
| Solyc02g066900.1.1 | Tomato | cytosol | 27.17 | 21.77 |
| Solyc02g066840.1.1 | Tomato | cytosol | 12.2 | 20.67 |
| Solyc02g066890.1.1 | Tomato | cytosol | 29.13 | 20.61 |
| TraesCS4A01G057800.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 37.8 | 18.79 |
| Solyc02g032720.1.1 | Tomato | cytosol | 26.38 | 18.11 |
| PGSC0003DMT400036545 | Potato | nucleus | 31.1 | 16.16 |
| Solyc02g030600.1.1 | Tomato | cytosol | 11.81 | 14.35 |
Protein Annotations
| EnsemblPlants:CDY00093 | EnsemblPlantsGene:GSBRNA2T00109591001 | GO:A0A078EL61 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009987 | InterPro:Jas | InterPro:NINJA_B | InterPro:Ninja_fam | InterPro:Ninja_motif | ncoils:Coil |
| PANTHER:PTHR31413 | PANTHER:PTHR31413:SF6 | PFAM:PF07897 | PFAM:PF16135 | PFAM:PF16136 | ProteinID:CDY00093 |
| ProteinID:CDY00093.1 | SEG:seg | UniParc:UPI0004EE8259 | MapMan:15.5.53.3 | : | : |
Description
BnaC09g02080D
Coordinates
chrLK031916:+:760978..762444
Molecular Weight (calculated)
27884.2 Da
IEP (calculated)
9.798
GRAVY (calculated)
-0.691
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGAEKREHG EEIPRDLLQR FMSKKQKSSV EDGEVEIELD LGLSLNGRFG VDPLAKTRLL ARSSSIPDLV VNGGGTELSR TCSLPVETEE WRKRKELQSL
101: RRLEAKRKRL EKQRNVRVLR EKHKAGGGGE ERSIGSSGSG SSGLSELDTS PSPPVQATTK ASIERSPSST QPLPENQAAR NMIDDMPCVS TTGDGPNGRK
201: IDGFLYRYRK GDEVRIVCVC HGSFLTPAEF VKHAGGRDVA RPLKHIVVNP SPFL
101: RRLEAKRKRL EKQRNVRVLR EKHKAGGGGE ERSIGSSGSG SSGLSELDTS PSPPVQATTK ASIERSPSST QPLPENQAAR NMIDDMPCVS TTGDGPNGRK
201: IDGFLYRYRK GDEVRIVCVC HGSFLTPAEF VKHAGGRDVA RPLKHIVVNP SPFL
001: MSKKQRLSEE DGEVEIELDL GLSLNGRFGV DPLAKTRLMR STSVLDLVVN DRSGLSRTCS LPVETEEEWR KRKELQSLRR LEAKRKRSEK QRKHKACGGE
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L
Arabidopsis Description
AFP3Ninja-family protein AFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q94F39]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.