Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400089614 | Potato | cytosol | 44.09 | 41.18 |
| PGSC0003DMT400036544 | Potato | cytosol | 26.77 | 26.77 |
| HORVU4Hr1G035770.1 | Barley | plastid | 20.47 | 23.42 |
| GSMUA_Achr4P32830_001 | Banana | nucleus | 22.05 | 20.59 |
| AT3G29575.1 | Thale cress | nucleus | 36.22 | 19.91 |
| TraesCS3D01G532000.1 | Wheat | nucleus | 25.2 | 18.82 |
| CDY04085 | Canola | nucleus | 34.65 | 17.67 |
| CDY00093 | Canola | nucleus | 34.65 | 17.32 |
| Bra036210.1-P | Field mustard | nucleus | 34.65 | 17.25 |
| CDY19988 | Canola | nucleus | 34.65 | 17.25 |
| CDY44386 | Canola | nucleus | 33.86 | 17.13 |
| Bra025400.1-P | Field mustard | nucleus | 33.86 | 16.1 |
| CDX86364 | Canola | nucleus | 33.86 | 16.1 |
| CDX85274 | Canola | nucleus | 33.07 | 15.85 |
| TraesCS3B01G594200.1 | Wheat | cytosol | 27.56 | 15.49 |
| CDX74273 | Canola | mitochondrion | 33.07 | 15.38 |
| Bra033105.1-P | Field mustard | nucleus | 25.98 | 15.14 |
| Bra001031.1-P | Field mustard | mitochondrion | 32.28 | 15.02 |
| PGSC0003DMT400003712 | Potato | nucleus | 36.22 | 14.65 |
| CDX91976 | Canola | mitochondrion | 31.5 | 14.04 |
| GSMUA_Achr6P34980_001 | Banana | cytosol | 29.92 | 13.43 |
| CDY68672 | Canola | cytosol, mitochondrion, nucleus, plastid | 29.13 | 13.41 |
| PGSC0003DMT400051959 | Potato | nucleus | 26.77 | 13.23 |
| TraesCS4A01G058100.1 | Wheat | nucleus | 25.2 | 13.01 |
| Bra039157.1-P | Field mustard | cytosol | 28.35 | 13.0 |
| TraesCS4B01G246800.1 | Wheat | nucleus | 24.41 | 12.81 |
| GSMUA_Achr9P09330_001 | Banana | nucleus | 33.07 | 12.43 |
| AT3G02140.1 | Thale cress | cytosol | 30.71 | 12.23 |
| GSMUA_Achr5P01470_001 | Banana | nucleus | 27.56 | 12.2 |
| TraesCS4D01G246100.2 | Wheat | nucleus | 23.62 | 11.95 |
| CDY43256 | Canola | mitochondrion | 25.98 | 11.79 |
| KRH45047 | Soybean | nucleus | 33.07 | 10.97 |
| VIT_14s0068g00300.t01 | Wine grape | nucleus | 33.07 | 10.85 |
| EER89528 | Sorghum | nucleus | 29.92 | 10.64 |
| KRH01286 | Soybean | nucleus | 31.5 | 10.61 |
| PGSC0003DMT400045906 | Potato | nucleus | 31.5 | 10.31 |
| PGSC0003DMT400072760 | Potato | nucleus | 30.71 | 9.49 |
| Os03t0214200-01 | Rice | nucleus | 29.13 | 9.23 |
| Zm00001d048085_P002 | Maize | nucleus | 27.56 | 8.91 |
| EER92642 | Sorghum | nucleus | 27.56 | 8.88 |
| HORVU4Hr1G067930.1 | Barley | nucleus | 27.56 | 8.66 |
| PGSC0003DMT400036545 | Potato | nucleus | 31.5 | 8.18 |
| TraesCS4B01G247000.1 | Wheat | nucleus | 23.62 | 7.58 |
| PGSC0003DMT400091590 | Potato | cytosol | 23.62 | 7.35 |
| TraesCS4D01G246400.1 | Wheat | nucleus | 22.83 | 7.32 |
| TraesCS4A01G057800.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 23.62 | 5.87 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400095238 | EnsemblPlantsGene:PGSC0003DMG400044809 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 |
| InterPro:Jas | InterPro:Ninja_fam | PANTHER:PTHR31413 | PANTHER:PTHR31413:SF10 | PFAM:PF16135 | PGSC:PGSC0003DMG400044809 |
| UniParc:UPI0002967149 | UniProt:M1DVV1 | MapMan:15.5.53.3 | : | : | : |
Description
Ninja-family protein AFP3 [Source:PGSC_GENE;Acc:PGSC0003DMG400044809]
Coordinates
chr2:+:7545856..7550173
Molecular Weight (calculated)
13934.2 Da
IEP (calculated)
9.332
GRAVY (calculated)
-0.157
Length
127 amino acids
Sequence
(BLAST)
(BLAST)
001: MKHARRITGN LYLAGDILEG IFSRLPVKTL LRLKCLCGLQ GSVASSVAEV ETQQPPTQGN YIAKGKIKNF MLNHMTFVST RGKRPNGKKT EGLLYACNKK
101: DEMEIVCLCH GDLLNAVEFV EHTGGGL
101: DEMEIVCLCH GDLLNAVEFV EHTGGGL
001: MSKKQRLSEE DGEVEIELDL GLSLNGRFGV DPLAKTRLMR STSVLDLVVN DRSGLSRTCS LPVETEEEWR KRKELQSLRR LEAKRKRSEK QRKHKACGGE
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L
Arabidopsis Description
AFP3Ninja-family protein AFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q94F39]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.