CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67659
CDX72108
CDX76014
CDX85274
CDX86364
CDX95951
CDX98125
CDY00093
CDY04085
CDY04272
CDY07354
CDY08701
CDY10500
CDY16104
CDY19988
CDY27189
CDY33807
CDY36406
CDY40905
CDY44386
CDY47381
CDY51261

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G29575.1	CDX98125	AT1G13740.1	18484180
AT3G29575.1	CDY16104	AT1G13740.1	18484180
AT3G29575.1	CDY33807	AT1G13740.1	18484180
AT3G29575.1	CDY36406	AT1G13740.1	18484180
AT3G29575.1	CDX95951	AT1G69260.1	18484180
AT3G29575.1	CDY04272	AT1G69260.1	18484180
AT3G29575.1	CDY07354	AT1G69260.1	18484180
AT3G29575.1	CDY40905	AT1G69260.1	18484180
AT3G29575.1	CDX85274	AT3G29575.1	18484180
AT3G29575.1	CDX86364	AT3G29575.1	18484180
AT3G29575.1	CDY00093	AT3G29575.1	18484180
AT3G29575.1	CDY04085	AT3G29575.1	18484180
AT3G29575.1	CDY19988	AT3G29575.1	18484180
AT3G29575.1	CDY44386	AT3G29575.1	18484180
AT3G29575.1	CDY08701	AT3G44460.1	18484180
AT3G29575.1	CDY10500	AT3G44460.1	18484180
AT3G29575.1	CDX67659	AT3G56850.1	18484180
AT3G29575.1	CDX72108	AT3G56850.1	18484180
AT3G29575.1	CDX76014	AT3G56850.1	18484180
AT3G29575.1	CDY27189	AT3G56850.1	18484180
AT3G29575.1	CDY47381	AT3G56850.1	18484180
AT3G29575.1	CDY51261	AT3G56850.1	18484180
AT3G29575.1	CDX67659	AT3G56850.1	21798944
AT3G29575.1	CDX72108	AT3G56850.1	21798944
AT3G29575.1	CDX76014	AT3G56850.1	21798944
AT3G29575.1	CDY27189	AT3G56850.1	21798944
AT3G29575.1	CDY47381	AT3G56850.1	21798944
AT3G29575.1	CDY51261	AT3G56850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025400.1-P	Field mustard	nucleus	100.0	100.0
CDX85274	Canola	nucleus	92.88	93.58
CDY19988	Canola	nucleus	74.16	77.65
CDY00093	Canola	nucleus	72.28	75.98
AT3G29575.1	Thale cress	nucleus	63.3	73.16
CDY44386	Canola	nucleus	68.16	72.51
CDY04085	Canola	nucleus	67.04	71.89
Solyc02g066850.1.1	Tomato	cytosol	16.1	65.15
GSMUA_Achr4P32830_001	Banana	nucleus	28.46	55.88
PGSC0003DMT400003712	Potato	nucleus	52.81	44.9
Solyc02g088910.2.1	Tomato	nucleus	51.31	43.22
PGSC0003DMT400036544	Potato	cytosol	18.73	39.37
CDY33807	Canola	nucleus	44.19	38.19
CDY16104	Canola	nucleus	43.82	37.86
PGSC0003DMT400089614	Potato	cytosol	18.73	36.76
Solyc02g032680.1.1	Tomato	cytosol	16.48	36.67
CDY36406	Canola	nucleus	40.07	36.64
CDX98125	Canola	nucleus	43.07	36.05
GSMUA_Achr9P09330_001	Banana	nucleus	45.32	35.8
VIT_14s0068g00300.t01	Wine grape	nucleus	51.69	35.66
Solyc02g032710.1.1	Tomato	cytosol	17.98	35.56
CDX74273	Canola	mitochondrion	35.58	34.8
CDY68672	Canola	cytosol, mitochondrion, nucleus, plastid	35.96	34.78
KRH01286	Soybean	nucleus	49.06	34.75
HORVU4Hr1G035770.1	Barley	plastid	14.23	34.23
KRH45047	Soybean	nucleus	48.69	33.94
PGSC0003DMT400095238	Potato	cytosol, mitochondrion	16.1	33.86
Solyc02g066870.1.1	Tomato	cytosol	19.85	33.76
CDX91976	Canola	mitochondrion	35.96	33.68
GSMUA_Achr6P34980_001	Banana	cytosol	34.46	32.51
CDY04272	Canola	nucleus	41.95	32.37
Solyc02g066860.1.1	Tomato	cytosol	15.73	32.31
CDY07354	Canola	nucleus	41.95	32.28
CDY43256	Canola	mitochondrion	33.71	32.14
Solyc02g032690.1.1	Tomato	cytosol	28.84	32.08
GSMUA_Achr5P01470_001	Banana	nucleus	34.46	32.06
CDX95951	Canola	nucleus	40.07	31.85
Solyc02g030610.1.1	Tomato	cytosol	18.35	30.62
CDY40905	Canola	nucleus	38.95	29.8
Solyc02g030650.1.1	Tomato	nucleus	19.85	29.44
TraesCS3B01G594200.1	Wheat	cytosol	24.34	28.76
Solyc02g032670.1.1	Tomato	cytosol	26.97	27.48
CDY08008	Canola	cytosol	29.21	27.18
TraesCS3D01G532000.1	Wheat	nucleus	17.23	27.06
Solyc02g030630.1.1	Tomato	cytosol	30.71	26.8
CDX74054	Canola	nucleus	28.84	26.74
Os03t0214200-01	Rice	nucleus	39.33	26.18
Solyc02g030620.1.1	Tomato	cytosol	28.84	26.01
EER89528	Sorghum	nucleus	33.71	25.21
TraesCS4B01G246800.1	Wheat	nucleus	22.47	24.79
CDY34910	Canola	peroxisome	25.84	24.73
EER92642	Sorghum	nucleus	36.33	24.62
TraesCS4A01G058100.1	Wheat	nucleus	22.47	24.39
Solyc01g058740.2.1	Tomato	cytosol	6.37	23.94
TraesCS4D01G246400.1	Wheat	nucleus	34.83	23.48
TraesCS4B01G247000.1	Wheat	nucleus	34.46	23.23
Zm00001d048085_P002	Maize	nucleus	34.08	23.16
TraesCS4D01G246100.2	Wheat	nucleus	21.35	22.71
HORVU4Hr1G067930.1	Barley	nucleus	32.96	21.78
Solyc02g066900.1.1	Tomato	cytosol	25.47	21.45
Solyc02g066890.1.1	Tomato	cytosol	28.09	20.89
Solyc02g066840.1.1	Tomato	cytosol	11.24	20.0
TraesCS4A01G057800.1	Wheat	cytosol, mitochondrion, nucleus, plastid	36.33	18.98
Solyc02g032720.1.1	Tomato	cytosol	25.09	18.11
PGSC0003DMT400036545	Potato	nucleus	29.21	15.95
Solyc02g030600.1.1	Tomato	cytosol	10.49	13.4

Protein Annotations

EnsemblPlants:CDX86364	EnsemblPlantsGene:GSBRNA2T00144490001	GO:A0A078DDE9	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	InterPro:Jas	InterPro:NINJA_B	InterPro:Ninja_fam	InterPro:Ninja_motif	ncoils:Coil
PANTHER:PTHR31413	PANTHER:PTHR31413:SF6	PFAM:PF07897	PFAM:PF16135	PFAM:PF16136	ProteinID:CDX86364
ProteinID:CDX86364.1	SEG:seg	UniParc:UPI000253FA75	MapMan:15.5.53.3	:	:

Description

BnaA06g30810D

Coordinates

chrLK031845:+:1222809..1224286

Molecular Weight (calculated)

29485.2 Da

IEP (calculated)

9.691

GRAVY (calculated)

-0.654

Length

267 amino acids

Sequence
(BLAST)

001: MSEAEKREDG KIYRNIPRPI SRDLLQSFMS KKNKNMSVED GEVEIELDLG LSLNGRFGVD PLAKTRLLTR SSSIPDFVVN DGRSELLSRT CSLPVETEEW
101: RKRKELQSLR RLEAKRKRFE KQRNVRVLRE KHKTGAGGGG REEKIVEEGS IGSSGSGSSG LSELDNTPPP PPVHATTNKS VETSPPITAP AARNIIEDMP
201: CVSTTGDGPN GKKIDGFLYR YRKGQEVRIV CVCHGSFLSP AEFIKHAGGS DVTHPLKHIV VNPSPFL

Best Arabidopsis Sequence Match ( AT3G29575.3 )
(BLAST)

001: MSKKQRLSEE DGEVEIELDL GLSLNGRFGV DPLAKTRLMR STSVLDLVVN DRSGLSRTCS LPVETEEEWR KRKELQSLRR LEAKRKRSEK QRKHKACGGE
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L

Arabidopsis Description

AFP3Ninja-family protein AFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q94F39]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.