CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67659
CDX72108
CDX74273
CDX76014
CDX85274
CDX86364
CDX91976
CDX98125
CDY00093
CDY04085
CDY08701
CDY10500
CDY16104
CDY19988
CDY27189
CDY33807
CDY36406
CDY43256
CDY44386
CDY47381
CDY51261
CDY68672

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G69260.1	CDX98125	AT1G13740.1	18484180
AT1G69260.1	CDY16104	AT1G13740.1	18484180
AT1G69260.1	CDY33807	AT1G13740.1	18484180
AT1G69260.1	CDY36406	AT1G13740.1	18484180
AT1G69260.1	CDX74273	AT3G02140.1	18484180
AT1G69260.1	CDX91976	AT3G02140.1	18484180
AT1G69260.1	CDY43256	AT3G02140.1	18484180
AT1G69260.1	CDY68672	AT3G02140.1	18484180
AT1G69260.1	CDX85274	AT3G29575.1	18484180
AT1G69260.1	CDX86364	AT3G29575.1	18484180
AT1G69260.1	CDY00093	AT3G29575.1	18484180
AT1G69260.1	CDY04085	AT3G29575.1	18484180
AT1G69260.1	CDY19988	AT3G29575.1	18484180
AT1G69260.1	CDY44386	AT3G29575.1	18484180
AT1G69260.1	CDY08701	AT3G44460.1	18484180
AT1G69260.1	CDY10500	AT3G44460.1	18484180
AT1G69260.1	CDX67659	AT3G56850.1	18484180
AT1G69260.1	CDX72108	AT3G56850.1	18484180
AT1G69260.1	CDX76014	AT3G56850.1	18484180
AT1G69260.1	CDY27189	AT3G56850.1	18484180
AT1G69260.1	CDY47381	AT3G56850.1	18484180
AT1G69260.1	CDY51261	AT3G56850.1	18484180

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004368.1-P	Field mustard	nucleus	91.96	94.79
CDY40905	Canola	nucleus	67.56	65.04
AT1G69260.1	Thale cress	nucleus	49.11	47.83
GSMUA_Achr4P32830_001	Banana	nucleus	18.15	44.85
CDY04085	Canola	nucleus	33.04	44.58
CDY19988	Canola	nucleus	33.63	44.31
CDY04272	Canola	nucleus	45.54	44.22
CDY07354	Canola	nucleus	45.24	43.8
CDY00093	Canola	nucleus	33.04	43.7
CDY44386	Canola	nucleus	32.14	43.03
CDY33807	Canola	nucleus	37.2	40.45
CDX85274	Canola	nucleus	31.85	40.38
CDX86364	Canola	nucleus	31.85	40.07
CDY16104	Canola	nucleus	36.61	39.81
CDY36406	Canola	nucleus	34.23	39.38
CDX98125	Canola	nucleus	37.2	39.19
VIT_01s0011g00410.t01	Wine grape	nucleus	38.1	35.56
GSMUA_Achr9P09330_001	Banana	nucleus	35.12	34.91
KRH70923	Soybean	nucleus	41.67	34.06
KRH75067	Soybean	nucleus	39.88	32.92
Solyc04g005380.2.1	Tomato	nucleus	37.2	32.55
CDX74273	Canola	mitochondrion	26.19	32.23
PGSC0003DMT400045906	Potato	nucleus	37.2	32.22
PGSC0003DMT400072760	Potato	nucleus	38.99	31.87
CDX91976	Canola	mitochondrion	26.79	31.58
HORVU4Hr1G035770.1	Barley	plastid	10.12	30.63
GSMUA_Achr5P01470_001	Banana	nucleus	25.6	29.97
TraesCS3D01G532000.1	Wheat	nucleus	14.58	28.82
CDY68672	Canola	cytosol, mitochondrion, nucleus, plastid	23.51	28.62
GSMUA_Achr6P34980_001	Banana	cytosol	23.81	28.27
CDY43256	Canola	mitochondrion	22.92	27.5
Solyc05g012210.2.1	Tomato	extracellular, golgi	36.61	26.57
TraesCS3B01G594200.1	Wheat	cytosol	17.86	26.55
Os03t0214200-01	Rice	nucleus	30.65	25.69
TraesCS4B01G246800.1	Wheat	nucleus	18.45	25.62
EER89528	Sorghum	nucleus	25.89	24.37
CDY34910	Canola	peroxisome	19.94	24.01
Zm00001d048085_P002	Maize	nucleus	27.68	23.66
EER92642	Sorghum	nucleus	27.68	23.6
CDY08008	Canola	cytosol	19.94	23.34
CDX74054	Canola	nucleus	19.94	23.26
TraesCS4A01G058100.1	Wheat	nucleus	16.96	23.17
TraesCS4D01G246100.2	Wheat	nucleus	16.37	21.91
TraesCS4D01G246400.1	Wheat	nucleus	25.6	21.72
TraesCS4B01G247000.1	Wheat	nucleus	25.0	21.21
HORVU4Hr1G067930.1	Barley	nucleus	24.11	20.05
TraesCS4A01G057800.1	Wheat	cytosol, mitochondrion, nucleus, plastid	26.49	17.42

Protein Annotations

EnsemblPlants:CDX95951	EnsemblPlantsGene:GSBRNA2T00101968001	GO:A0A078E3L2	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	InterPro:Jas	InterPro:NINJA_B	InterPro:Ninja_fam	InterPro:Ninja_motif	PANTHER:PTHR31413
PANTHER:PTHR31413:SF6	PFAM:PF07897	PFAM:PF16135	PFAM:PF16136	ProteinID:CDX95951	ProteinID:CDX95951.1
SEG:seg	UniParc:UPI0004EE0488	MapMan:15.5.53.3	:	:	:

Description

BnaA07g27800D

Coordinates

chrLK031892:-:232132..233478

Molecular Weight (calculated)

37312.2 Da

IEP (calculated)

8.050

GRAVY (calculated)

-0.765

Length

336 amino acids

Sequence
(BLAST)

001: MSEANERTRE MSRSMFPRDL LQRFPPISAK VVDGEEEEDE EIELDLSLSL GGRFGVDKSK LARSSSVVGP TMPFFRENHQ PETEMRPVET SVAGHMALTR
101: ATSLPVETEE EWRRRKEMES LRRMEAKRRR SEKLRARGSG GGNIIKPPEA NNDSVMGEGS TPTRRRGRPR LVLPRWSGTA NEGGLLRQHS AGHVSLQVSR
201: GSSSSVSEME TKSHQASSEE ARSLPSPQQQ HQQEAMAMPD NGLRRLSSVD MRIEPPPLGN GKNVMPCVFT RGDGPNGKRV DGILYRYGNG EEVKIMCACH
301: CDILSPADFV KHAGGPHVDH PLRHIIVDTS SLSNLF

Best Arabidopsis Sequence Match ( AT1G69260.1 )
(BLAST)

001: MAEANERSKE MARSNSCVFP RDLLQRFISN SVEGEDDDEE EDDDEIELNL GLSLGGRFGV DKSNKLVRSS SVVVTMPLFR EDHHHHQAAA MITTKVSTET
101: VAGATRGTGL MRTTSLPAES EEEWRKRKEM QTLRRMAAKR RRSEKLRTGV GGGNSNNPEE AATATASRRR GRPSSGLPRW SATANKSGLL RQHSAGLDSL
201: QVSGESLGGG RAAGSSSSVS ELETKASSDE ARSLPSTTQP QQETTTKPTN RLRRLSSVDM NMKMEPQGKG KSEMPCVFTK GDGPNGKRVD GILYRYGSGE
301: EVRIMCVCHG DFLSPADFVK HAGGPHVDHP LRHIVVNTSS PSNLL

Arabidopsis Description

AFP1Ninja-family protein AFP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ98]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.