Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g005380.2.1 | Tomato | nucleus | 73.2 | 73.96 |
| GSMUA_Achr4P32830_001 | Banana | nucleus | 18.3 | 52.21 |
| VIT_01s0011g00410.t01 | Wine grape | nucleus | 44.07 | 47.5 |
| Bra026891.1-P | Field mustard | nucleus | 34.02 | 42.72 |
| CDY16104 | Canola | nucleus | 34.02 | 42.72 |
| CDY33807 | Canola | nucleus | 34.02 | 42.72 |
| PGSC0003DMT400003712 | Potato | nucleus | 33.51 | 41.4 |
| PGSC0003DMT400072760 | Potato | nucleus | 43.56 | 41.12 |
| PGSC0003DMT400036544 | Potato | cytosol | 13.4 | 40.94 |
| CDY36406 | Canola | nucleus | 30.15 | 40.07 |
| Bra004004.1-P | Field mustard | nucleus | 35.57 | 39.88 |
| Bra019706.1-P | Field mustard | nucleus | 32.47 | 39.87 |
| AT1G69260.1 | Thale cress | nucleus | 35.31 | 39.71 |
| CDX98125 | Canola | nucleus | 32.47 | 39.5 |
| CDY07354 | Canola | nucleus | 35.31 | 39.48 |
| CDY04272 | Canola | nucleus | 35.05 | 39.31 |
| Bra004368.1-P | Field mustard | nucleus | 32.47 | 38.65 |
| AT1G13740.1 | Thale cress | nucleus | 34.54 | 38.51 |
| GSMUA_Achr9P09330_001 | Banana | nucleus | 33.25 | 38.17 |
| CDX95951 | Canola | nucleus | 32.22 | 37.2 |
| KRH75067 | Soybean | nucleus | 38.66 | 36.85 |
| HORVU4Hr1G035770.1 | Barley | plastid | 10.31 | 36.04 |
| KRH70923 | Soybean | nucleus | 38.14 | 36.01 |
| GSMUA_Achr5P01470_001 | Banana | nucleus | 26.29 | 35.54 |
| CDY40905 | Canola | nucleus | 31.96 | 35.53 |
| GSMUA_Achr6P34980_001 | Banana | cytosol | 25.52 | 34.98 |
| PGSC0003DMT400089614 | Potato | cytosol | 11.86 | 33.82 |
| TraesCS3D01G532000.1 | Wheat | nucleus | 14.18 | 32.35 |
| PGSC0003DMT400095238 | Potato | cytosol, mitochondrion | 10.31 | 31.5 |
| TraesCS4A01G058100.1 | Wheat | nucleus | 18.3 | 28.86 |
| TraesCS4B01G246800.1 | Wheat | nucleus | 17.78 | 28.51 |
| EER89528 | Sorghum | nucleus | 25.77 | 28.01 |
| Os03t0214200-01 | Rice | nucleus | 28.87 | 27.93 |
| TraesCS4D01G246100.2 | Wheat | nucleus | 18.04 | 27.89 |
| TraesCS3B01G594200.1 | Wheat | cytosol | 16.24 | 27.88 |
| EER92642 | Sorghum | nucleus | 27.84 | 27.41 |
| TraesCS4B01G247000.1 | Wheat | nucleus | 27.32 | 26.77 |
| TraesCS4D01G246400.1 | Wheat | nucleus | 26.55 | 26.01 |
| Zm00001d048085_P002 | Maize | nucleus | 26.29 | 25.95 |
| HORVU4Hr1G067930.1 | Barley | nucleus | 26.55 | 25.5 |
| PGSC0003DMT400051959 | Potato | nucleus | 14.95 | 22.57 |
| TraesCS4A01G057800.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 28.09 | 21.33 |
| PGSC0003DMT400036545 | Potato | nucleus | 22.42 | 17.79 |
| PGSC0003DMT400091590 | Potato | cytosol | 17.27 | 16.42 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400045906 | EnsemblPlantsGene:PGSC0003DMG401017804 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 |
| InterPro:Jas | InterPro:NINJA_B | InterPro:Ninja_fam | InterPro:Ninja_motif | ncoils:Coil | PANTHER:PTHR31413 |
| PANTHER:PTHR31413:SF6 | PFAM:PF07897 | PFAM:PF16135 | PFAM:PF16136 | PGSC:PGSC0003DMG401017804 | SEG:seg |
| UniParc:UPI000295D690 | UniProt:M1BIC5 | MapMan:15.5.53.3 | : | : | : |
Description
RNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG401017804]
Coordinates
chr4:+:13778..17774
Molecular Weight (calculated)
42753.6 Da
IEP (calculated)
8.200
GRAVY (calculated)
-0.619
Length
388 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDADERKRR SRVEMENLSS NTSRFSRDLL QRFMGISEKS DLEKVDDINE DELNLGLSLG GRFGIDKSSS NLLVRSSSIA ACLPTVRDDD AVVSSSLSQS
101: VSYNPSLVRT SSLPVETELE WRKRKELQSL RRMEAKRRRS EKVQRNLRGE KCMEDENRGT DQMNLRGGNN NNNNKLEKEQ FLATARKFGC KLPTLAALGA
201: DDMAMAKGKE SYFQEKRKPA SQGSMESQGG CSSSISELES KPAQEMFLFA LPSTGDILRV VVCVEYFGGS ADASPSSIQS LQSRDFGSRT LGGEVEISPS
301: NTTRSRVQES EAKALGDMPC VFTKGDGPNG RRIDGILYKY GKGEEIRIMC VCHGSFLSPA EFVKHAGGSD VAHPLKHIVI KPNPSPFL
101: VSYNPSLVRT SSLPVETELE WRKRKELQSL RRMEAKRRRS EKVQRNLRGE KCMEDENRGT DQMNLRGGNN NNNNKLEKEQ FLATARKFGC KLPTLAALGA
201: DDMAMAKGKE SYFQEKRKPA SQGSMESQGG CSSSISELES KPAQEMFLFA LPSTGDILRV VVCVEYFGGS ADASPSSIQS LQSRDFGSRT LGGEVEISPS
301: NTTRSRVQES EAKALGDMPC VFTKGDGPNG RRIDGILYKY GKGEEIRIMC VCHGSFLSPA EFVKHAGGSD VAHPLKHIVI KPNPSPFL
001: MAEANERSKE MARSNSCVFP RDLLQRFISN SVEGEDDDEE EDDDEIELNL GLSLGGRFGV DKSNKLVRSS SVVVTMPLFR EDHHHHQAAA MITTKVSTET
101: VAGATRGTGL MRTTSLPAES EEEWRKRKEM QTLRRMAAKR RRSEKLRTGV GGGNSNNPEE AATATASRRR GRPSSGLPRW SATANKSGLL RQHSAGLDSL
201: QVSGESLGGG RAAGSSSSVS ELETKASSDE ARSLPSTTQP QQETTTKPTN RLRRLSSVDM NMKMEPQGKG KSEMPCVFTK GDGPNGKRVD GILYRYGSGE
301: EVRIMCVCHG DFLSPADFVK HAGGPHVDHP LRHIVVNTSS PSNLL
101: VAGATRGTGL MRTTSLPAES EEEWRKRKEM QTLRRMAAKR RRSEKLRTGV GGGNSNNPEE AATATASRRR GRPSSGLPRW SATANKSGLL RQHSAGLDSL
201: QVSGESLGGG RAAGSSSSVS ELETKASSDE ARSLPSTTQP QQETTTKPTN RLRRLSSVDM NMKMEPQGKG KSEMPCVFTK GDGPNGKRVD GILYRYGSGE
301: EVRIMCVCHG DFLSPADFVK HAGGPHVDHP LRHIVVNTSS PSNLL
Arabidopsis Description
AFP1Ninja-family protein AFP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ98]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.