Factsheet for Bra026891.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001031.1-P
Bra003253.1-P
Bra004004.1-P
Bra004368.1-P
Bra007274.1-P
Bra007276.1-P
Bra014668.1-P
Bra019436.1-P
Bra019706.1-P
Bra025400.1-P
Bra026891.1-P
Bra033105.1-P
Bra036210.1-P
Bra039157.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13740.1	Bra019706.1-P	AT1G13740.1	18484180
AT1G13740.1	Bra026891.1-P	AT1G13740.1	18484180
AT1G13740.1	Bra004004.1-P	AT1G69260.1	18484180
AT1G13740.1	Bra004368.1-P	AT1G69260.1	18484180
AT1G13740.1	Bra001031.1-P	AT3G02140.1	18484180
AT1G13740.1	Bra039157.1-P	AT3G02140.1	18484180
AT1G13740.1	Bra025400.1-P	AT3G29575.1	18484180
AT1G13740.1	Bra033105.1-P	AT3G29575.1	18484180
AT1G13740.1	Bra036210.1-P	AT3G29575.1	18484180
AT1G13740.1	Bra019436.1-P	AT3G44460.1	18484180
AT1G13740.1	Bra003253.1-P	AT3G56850.1	18484180
AT1G13740.1	Bra007274.1-P	AT3G56850.1	18484180
AT1G13740.1	Bra007276.1-P	AT3G56850.1	18484180
AT1G13740.1	Bra014668.1-P	AT3G56850.1	18484180

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33807	Canola	nucleus	99.68	99.68
CDY16104	Canola	nucleus	97.41	97.41
Bra019706.1-P	Field mustard	nucleus	61.81	60.44
AT1G13740.1	Thale cress	nucleus	64.08	56.9
GSMUA_Achr4P32830_001	Banana	nucleus	21.36	48.53
Bra027018.1-P	Field mustard	cytosol	9.06	47.46
Bra036210.1-P	Field mustard	nucleus	38.84	47.06
Bra025400.1-P	Field mustard	nucleus	38.19	44.19
Bra033105.1-P	Field mustard	nucleus	29.13	41.28
VIT_01s0011g00410.t01	Wine grape	nucleus	45.31	38.89
Bra004004.1-P	Field mustard	nucleus	42.07	37.57
Bra004368.1-P	Field mustard	nucleus	39.48	37.42
KRH75067	Soybean	nucleus	48.22	36.61
KRH70923	Soybean	nucleus	48.22	36.25
GSMUA_Achr9P09330_001	Banana	nucleus	38.19	34.91
HORVU4Hr1G035770.1	Barley	plastid	12.3	34.23
PGSC0003DMT400045906	Potato	nucleus	42.72	34.02
Solyc04g005380.2.1	Tomato	nucleus	41.75	33.59
PGSC0003DMT400072760	Potato	nucleus	44.66	33.58
GSMUA_Achr5P01470_001	Banana	nucleus	31.07	33.45
Bra001031.1-P	Field mustard	mitochondrion	28.16	31.87
GSMUA_Achr6P34980_001	Banana	cytosol	27.83	30.39
Bra039157.1-P	Field mustard	cytosol	27.18	30.32
Solyc05g012210.2.1	Tomato	extracellular, golgi	43.69	29.16
Os03t0214200-01	Rice	nucleus	37.54	28.93
TraesCS3B01G594200.1	Wheat	cytosol	20.71	28.32
EER92642	Sorghum	nucleus	35.6	27.92
TraesCS3D01G532000.1	Wheat	nucleus	15.21	27.65
EER89528	Sorghum	nucleus	31.39	27.17
Zm00001d048085_P002	Maize	nucleus	33.98	26.72
TraesCS4B01G246800.1	Wheat	nucleus	20.39	26.03
TraesCS4A01G058100.1	Wheat	nucleus	20.71	26.02
TraesCS4D01G246400.1	Wheat	nucleus	33.33	26.01
TraesCS4D01G246100.2	Wheat	nucleus	20.71	25.5
Bra040367.1-P	Field mustard	nucleus	22.65	25.09
TraesCS4B01G247000.1	Wheat	nucleus	31.72	24.75
Bra001242.1-P	Field mustard	nucleus	22.65	24.31
HORVU4Hr1G067930.1	Barley	nucleus	29.77	22.77
TraesCS4A01G057800.1	Wheat	cytosol, mitochondrion, nucleus, plastid	33.98	20.55

Protein Annotations

EnsemblPlants:Bra026891.1	EnsemblPlants:Bra026891.1-P	EnsemblPlantsGene:Bra026891	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	InterPro:Jas	InterPro:NINJA_B	InterPro:Ninja_fam	InterPro:Ninja_motif	ncoils:Coil
PANTHER:PTHR31413	PANTHER:PTHR31413:SF6	PFAM:PF07897	PFAM:PF16135	PFAM:PF16136	SEG:seg
UniParc:UPI0002542E98	UniProt:M4EDN1	MapMan:15.5.53.3	:	:	:

Description

AT1G13740 (E=1e-063) AFP2 | AFP2 (ABI FIVE BINDING PROTEIN 2)

Coordinates

chrA09:-:34149563..34150556

Molecular Weight (calculated)

34149.9 Da

IEP (calculated)

6.774

GRAVY (calculated)

-0.837

Length

309 amino acids

Sequence
(BLAST)

001: MGEEAREWNR GTNLSLDMNK YPRDLLRGFM SENVDGRDET SDCEDETAVE LNLGLSLGGR FGVDKAPRKL KRSSSVLSTM PFESSIVADK EEVEPENYTV
101: GLARTTSLPA EMEEEWRKRK EMQSLRRMEA KRRRCEKQSS QTASFESERW VNASKSGFLQ RHLVSPRQVC VDSHGGGGSS SSLSELDNKN QQQGSSNSCG
201: DQISPKMMTR CSSNNSESHG NENETPKGKG TASSTGLFDM PCVFTKGDGP NGRRVDGILY KYGKGEEVRI MCICHGSFLT PAEFVKHGGG GDVDRPLRHI
301: VVNTSPSTF

Best Arabidopsis Sequence Match ( AT1G13740.1 )
(BLAST)

001: MGEASRQQRA WNREMTVTTN LSLDIDKYPR DLLRGFMSEN GGGRVFHGGE TNCDDESTIE LNLGLSLGGR FGVDKTPRKL KRSSSVLDTV PFNDSTVAEP
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF

Arabidopsis Description

AFP2AFP2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.