Factsheet for Bra007274.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001031.1-P
Bra003649.1-P
Bra004004.1-P
Bra004368.1-P
Bra008355.1-P
Bra012325.1-P
Bra016380.1-P
Bra019706.1-P
Bra025400.1-P
Bra026891.1-P
Bra033105.1-P
Bra035027.1-P
Bra036210.1-P
Bra039157.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56850.1	Bra019706.1-P	AT1G13740.1	18484180
AT3G56850.1	Bra026891.1-P	AT1G13740.1	18484180
AT3G56850.1	Bra004004.1-P	AT1G69260.1	18484180
AT3G56850.1	Bra004368.1-P	AT1G69260.1	18484180
AT3G56850.1	Bra003649.1-P	AT1G78300.1	21798944
AT3G56850.1	Bra008355.1-P	AT1G78300.1	21798944
AT3G56850.1	Bra012325.1-P	AT1G78300.1	21798944
AT3G56850.1	Bra016380.1-P	AT1G78300.1	21798944
AT3G56850.1	Bra035027.1-P	AT1G78300.1	21798944
AT3G56850.1	Bra001031.1-P	AT3G02140.1	18484180
AT3G56850.1	Bra039157.1-P	AT3G02140.1	18484180
AT3G56850.1	Bra025400.1-P	AT3G29575.1	18484180
AT3G56850.1	Bra033105.1-P	AT3G29575.1	18484180
AT3G56850.1	Bra036210.1-P	AT3G29575.1	18484180

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27189	Canola	nucleus	86.17	98.38
CDX72108	Canola	nucleus	86.88	97.61
Bra007276.1-P	Field mustard	nucleus	96.81	96.81
CDY51261	Canola	nucleus	80.14	90.4
Bra014668.1-P	Field mustard	nucleus	71.99	88.65
AT3G56850.1	Thale cress	nucleus	90.43	85.86
Bra016953.1-P	Field mustard	nucleus	63.12	66.67
Bra004597.1-P	Field mustard	nucleus	66.31	66.55
Bra003253.1-P	Field mustard	plastid	79.79	55.83
KRH64894	Soybean	nucleus	59.22	52.85
KRG94991	Soybean	nucleus	59.22	52.19
KRG94206	Soybean	nucleus	59.22	52.02
KRH57716	Soybean	nucleus	56.74	49.08
PGSC0003DMT400072260	Potato	nucleus	59.57	48.41
Solyc10g081350.1.1	Tomato	nucleus	59.22	47.71
PGSC0003DMT400018574	Potato	nucleus	53.55	47.34
Solyc10g076920.1.1	Tomato	nucleus	39.36	39.22
Bra018800.1-P	Field mustard	nucleus	41.13	31.52
Bra040260.1-P	Field mustard	nucleus	39.36	30.49
Bra022409.1-P	Field mustard	nucleus	37.94	30.23
Bra017251.1-P	Field mustard	nucleus	41.49	29.55
Bra019436.1-P	Field mustard	nucleus	34.4	28.87
Bra001742.1-P	Field mustard	nucleus	36.17	28.73
Bra037533.1-P	Field mustard	nucleus	37.23	27.06
Bra005287.1-P	Field mustard	nucleus	41.49	26.71
Bra033719.1-P	Field mustard	nucleus, plastid	23.4	24.81
Bra015281.1-P	Field mustard	nucleus, plastid	22.7	23.88
Bra033649.1-P	Field mustard	nucleus	34.75	23.67
Bra011485.1-P	Field mustard	nucleus	35.46	22.78
Bra017621.1-P	Field mustard	cytosol	20.57	19.46

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EnsemblPlantsGene:Bra007274	EnsemblPlants:Bra007274.1	EnsemblPlants:Bra007274.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	UniProt:M4CST2	PFAM:PF00170	ScanProsite:PS00036
PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF137	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0002542C0E
InterPro:bZIP	SEG:seg	:	:	:	:

Description

AT3G56850 (E=9e-127) AREB3, DPBF3 | AREB3 (ABA-RESPONSIVE ELEMENT BINDING PROTEIN 3); DNA binding / transcription activator/ transcription factor

Coordinates

chrA09:-:28308010..28309246

Molecular Weight (calculated)

31261.1 Da

IEP (calculated)

9.816

GRAVY (calculated)

-0.853

Length

282 amino acids

Sequence
(BLAST)

001: MDSQREARSQ QSLNRQGSLY SLTLDEVQTH LGSSGKALGS MNLDELLKSV CSVDGNQPSS LAAHEGLSRQ GSLTLPRDLS KKTVEEVWKD IQQDKNGGGS
101: GHERRDKQPT LGEMTLEDLL LKAGVVTETV PGSNHGNGSA GMEQNIPQVA PWVQYHQLPS MPQPQSFMPY PVADMQAMVS QSSLMGGLSD TQTPGRKRVA
201: SGEVVEKTVE RKQKRMIKNR ESAARSRARK QAYTHELEIK VSRLEEENER LRRQKEVEKI LPSAPPPLDP KRQLRRTSSA PF

Best Arabidopsis Sequence Match ( AT3G56850.1 )
(BLAST)

001: MDSQRGIVEQ AKSQSLNRQS SLYSLTLDEV QNHLGSSGKA LGSMNLDELL KSVCSVEANQ PSSMAVNGGA AAQEGLSRQG SLTLPRDLSK KTVDEVWKDI
101: QQNKNGGSAH ERRDKQPTLG EMTLEDLLLK AGVVTETIPG SNHDGPVGGG SAGSGAGLGQ NITQVGPWIQ YHQLPSMPQP QAFMPYPVSD MQAMVSQSSL
201: MGGLSDTQTP GRKRVASGEV VEKTVERRQK RMIKNRESAA RSRARKQAYT HELEIKVSRL EEENERLRKQ KEVEKILPSV PPPDPKRQLR RTSSAPF

Arabidopsis Description

DPBF3ABSCISIC ACID-INSENSITIVE 5-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LES3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.