Factsheet for Solyc10g076920.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g058740.2.1
Solyc02g030600.1.1
Solyc02g030610.1.1
Solyc02g030620.1.1
Solyc02g030630.1.1
Solyc02g030650.1.1
Solyc02g032670.1.1
Solyc02g032680.1.1
Solyc02g032690.1.1
Solyc02g032710.1.1
Solyc02g032720.1.1
Solyc02g066840.1.1
Solyc02g066850.1.1
Solyc02g066860.1.1
Solyc02g066870.1.1
Solyc02g066890.1.1
Solyc02g066900.1.1
Solyc02g088910.2.1
Solyc04g005380.2.1
Solyc04g012120.2.1
Solyc05g012210.2.1
Solyc11g010200.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56850.1	Solyc04g005380.2.1	AT1G13740.1	18484180
AT3G56850.1	Solyc05g012210.2.1	AT1G13740.1	18484180
AT3G56850.1	Solyc04g005380.2.1	AT1G69260.1	18484180
AT3G56850.1	Solyc05g012210.2.1	AT1G69260.1	18484180
AT3G56850.1	Solyc04g012120.2.1	AT1G78300.1	21798944
AT3G56850.1	Solyc11g010200.1.1	AT1G78300.1	21798944
AT3G56850.1	Solyc01g058740.2.1	AT3G02140.1	18484180
AT3G56850.1	Solyc02g030600.1.1	AT3G02140.1	18484180
AT3G56850.1	Solyc02g030610.1.1	AT3G02140.1	18484180
AT3G56850.1	Solyc02g030620.1.1	AT3G02140.1	18484180
AT3G56850.1	Solyc02g030630.1.1	AT3G02140.1	18484180
AT3G56850.1	Solyc02g030650.1.1	AT3G02140.1	18484180
AT3G56850.1	Solyc02g032670.1.1	AT3G02140.1	18484180
AT3G56850.1	Solyc02g032680.1.1	AT3G02140.1	18484180
AT3G56850.1	Solyc02g032690.1.1	AT3G02140.1	18484180
AT3G56850.1	Solyc02g032710.1.1	AT3G02140.1	18484180
AT3G56850.1	Solyc02g032720.1.1	AT3G02140.1	18484180
AT3G56850.1	Solyc02g066840.1.1	AT3G02140.1	18484180
AT3G56850.1	Solyc02g066850.1.1	AT3G02140.1	18484180
AT3G56850.1	Solyc02g066860.1.1	AT3G02140.1	18484180
AT3G56850.1	Solyc02g066870.1.1	AT3G02140.1	18484180
AT3G56850.1	Solyc02g066890.1.1	AT3G02140.1	18484180
AT3G56850.1	Solyc02g066900.1.1	AT3G02140.1	18484180
AT3G56850.1	Solyc02g088910.2.1	AT3G02140.1	18484180
AT3G56850.1	Solyc01g058740.2.1	AT3G29575.1	18484180
AT3G56850.1	Solyc02g030600.1.1	AT3G29575.1	18484180
AT3G56850.1	Solyc02g030610.1.1	AT3G29575.1	18484180
AT3G56850.1	Solyc02g030620.1.1	AT3G29575.1	18484180
AT3G56850.1	Solyc02g030630.1.1	AT3G29575.1	18484180
AT3G56850.1	Solyc02g030650.1.1	AT3G29575.1	18484180
AT3G56850.1	Solyc02g032670.1.1	AT3G29575.1	18484180
AT3G56850.1	Solyc02g032680.1.1	AT3G29575.1	18484180
AT3G56850.1	Solyc02g032690.1.1	AT3G29575.1	18484180
AT3G56850.1	Solyc02g032710.1.1	AT3G29575.1	18484180
AT3G56850.1	Solyc02g032720.1.1	AT3G29575.1	18484180
AT3G56850.1	Solyc02g066840.1.1	AT3G29575.1	18484180
AT3G56850.1	Solyc02g066850.1.1	AT3G29575.1	18484180
AT3G56850.1	Solyc02g066860.1.1	AT3G29575.1	18484180
AT3G56850.1	Solyc02g066870.1.1	AT3G29575.1	18484180
AT3G56850.1	Solyc02g066890.1.1	AT3G29575.1	18484180
AT3G56850.1	Solyc02g066900.1.1	AT3G29575.1	18484180
AT3G56850.1	Solyc02g088910.2.1	AT3G29575.1	18484180

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018574	Potato	nucleus	91.87	81.5
Solyc10g081350.1.1	Tomato	nucleus	62.9	50.86
KRH64894	Soybean	nucleus	49.12	43.99
KRG94991	Soybean	nucleus	49.47	43.75
KRG94206	Soybean	nucleus	49.47	43.61
CDX72108	Canola	nucleus	37.81	42.63
KRH57716	Soybean	nucleus	48.41	42.02
AT2G41070.4	Thale cress	nucleus	39.58	41.33
CDY51261	Canola	nucleus	35.69	40.4
Bra007276.1-P	Field mustard	nucleus	39.58	39.72
Bra007274.1-P	Field mustard	nucleus	39.22	39.36
CDY27189	Canola	nucleus	34.28	39.27
AT3G56850.1	Thale cress	nucleus	40.99	39.06
CDY57581	Canola	nucleus	37.1	38.6
CDX76014	Canola	nucleus	36.04	37.64
Bra004597.1-P	Field mustard	nucleus	36.75	37.01
Solyc01g008980.2.1	Tomato	nucleus	19.08	36.99
CDX79959	Canola	nucleus	36.75	36.88
Bra014668.1-P	Field mustard	nucleus	29.68	36.68
CDX67659	Canola	nucleus	33.57	36.68
CDY06946	Canola	nucleus	35.69	36.59
Bra016953.1-P	Field mustard	nucleus	34.28	36.33
CDY53679	Canola	nucleus	34.98	36.13
CDY47381	Canola	nucleus	36.75	35.86
Bra003253.1-P	Field mustard	plastid	36.4	25.56
Solyc04g078840.2.1	Tomato	nucleus	36.04	22.82
Solyc01g108080.2.1	Tomato	nucleus	32.86	22.46
Solyc09g009490.2.1	Tomato	nucleus	32.51	21.6
Solyc11g044560.1.1	Tomato	nucleus	30.39	21.55
Solyc01g009510.1.1	Tomato	nucleus	14.13	21.05
Solyc10g050210.1.1	Tomato	nucleus	27.56	20.1
Solyc04g071510.2.1	Tomato	nucleus, plastid	21.2	19.48
Solyc01g104650.2.1	Tomato	nucleus	19.43	18.52

Protein Annotations

EnsemblPlants:Solyc10g076920.1.1	EnsemblPlantsGene:Solyc10g076920.1	Gene3D:1.20.5.170	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827
InterPro:bZIP	PANTHER:PTHR22952	PANTHER:PTHR22952:SF137	ScanProsite:PS00036	SEG:seg	SUPFAM:SSF57959
UniParc:UPI0002769F1D	UniProt:K4D234	MapMan:15.5.4.1	:	:	:

Description

No Description!

Coordinates

chr10:+:59888891..59889742

Molecular Weight (calculated)

31438.6 Da

IEP (calculated)

7.802

GRAVY (calculated)

-0.527

Length

283 amino acids

Sequence
(BLAST)

001: MVIQEMGSRG GGEAKANALA TQGSLYSLTL DEVRNQLGNC GKPLNSMNLD EFVKTVWTIE SNQEVVGGND YGPVQQGASQ HHPSSITMSR DLSKKTVDEV
101: WQDIQQGVKI DNVDKRSQER QLTLGEITLE DFLVKAGVIA ESTQGKRISG LVFGVDSMSL TQQAQWTHYQ IPAMQQVPEQ QHQQQQQNIP PVFMPGHPIQ
201: QPLPVVANPI MDATYPETQV TMSPAHIIGT LSDTQTSGRK RVAPRDVAEN SIERRQKRMI KNRESAARSR ARKQVLLLIL HLL

Best Arabidopsis Sequence Match ( AT3G56850.1 )
(BLAST)

001: MDSQRGIVEQ AKSQSLNRQS SLYSLTLDEV QNHLGSSGKA LGSMNLDELL KSVCSVEANQ PSSMAVNGGA AAQEGLSRQG SLTLPRDLSK KTVDEVWKDI
101: QQNKNGGSAH ERRDKQPTLG EMTLEDLLLK AGVVTETIPG SNHDGPVGGG SAGSGAGLGQ NITQVGPWIQ YHQLPSMPQP QAFMPYPVSD MQAMVSQSSL
201: MGGLSDTQTP GRKRVASGEV VEKTVERRQK RMIKNRESAA RSRARKQAYT HELEIKVSRL EEENERLRKQ KEVEKILPSV PPPDPKRQLR RTSSAPF

Arabidopsis Description

DPBF3ABSCISIC ACID-INSENSITIVE 5-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LES3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.