Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- vacuole 1
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| extracellular:
22364583
nucleus: 25464976 nucleus: 28394025 extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400060654 | Potato | cytosol | 99.22 | 99.22 |
| Solyc12g057110.2.1 | Tomato | extracellular, nucleus | 88.24 | 88.58 |
| Solyc11g010200.1.1 | Tomato | nucleus | 90.2 | 85.5 |
| Bra008355.1-P | Field mustard | cytosol | 83.14 | 84.8 |
| AT1G78300.1 | Thale cress | cytosol | 85.49 | 84.17 |
| CDY14618 | Canola | cytosol | 85.1 | 83.46 |
| CDX68022 | Canola | cytosol | 84.71 | 83.08 |
| CDX79255 | Canola | cytosol | 84.71 | 83.08 |
| Bra003649.1-P | Field mustard | cytosol | 84.31 | 82.69 |
| Solyc03g034180.2.1 | Tomato | cytosol | 83.53 | 82.56 |
| Bra035027.1-P | Field mustard | cytosol | 83.53 | 81.92 |
| CDX88436 | Canola | cytosol | 83.53 | 81.92 |
| Solyc02g063070.2.1 | Tomato | plastid | 83.53 | 81.92 |
| Solyc04g074510.2.1 | Tomato | extracellular, nucleus | 85.1 | 80.97 |
| Bra028068.1-P | Field mustard | cytosol | 82.35 | 80.46 |
| CDY12024 | Canola | cytosol | 82.35 | 80.46 |
| CDX73313 | Canola | cytosol | 82.75 | 79.62 |
| CDY41483 | Canola | cytosol | 80.78 | 79.54 |
| CDX91676 | Canola | cytosol | 80.39 | 79.15 |
| Bra016380.1-P | Field mustard | cytosol | 80.39 | 79.15 |
| CDY28408 | Canola | cytosol | 81.57 | 79.09 |
| Bra034430.1-P | Field mustard | cytosol | 81.57 | 79.09 |
| CDY46646 | Canola | cytosol | 78.43 | 76.92 |
| CDY00447 | Canola | cytosol | 78.43 | 76.92 |
| Bra012325.1-P | Field mustard | cytosol | 78.43 | 76.05 |
| Solyc11g010470.1.1 | Tomato | extracellular, nucleus | 72.16 | 73.9 |
| Solyc04g076060.2.1 | Tomato | nucleus | 71.37 | 72.22 |
| AT1G35160.2 | Thale cress | cytosol | 83.14 | 71.86 |
| CDX87455 | Canola | cytosol | 83.92 | 71.57 |
| AT4G09000.2 | Thale cress | cytosol | 83.53 | 66.98 |
| Solyc07g053260.2.1 | Tomato | plastid | 67.45 | 65.9 |
| Solyc04g074230.2.1 | Tomato | extracellular | 66.67 | 63.91 |
| Solyc01g010360.2.1 | Tomato | cytosol | 67.84 | 63.14 |
| Solyc05g012420.2.1 | Tomato | unclear | 69.8 | 62.46 |
| Solyc12g010860.1.1 | Tomato | plastid | 63.14 | 61.69 |
| Zm00001d013429_P001 | Maize | extracellular | 26.67 | 58.62 |
| KRH05108 | Soybean | cytosol | 36.47 | 58.49 |
| GSMUA_Achr3P17880_001 | Banana | cytosol | 32.55 | 47.16 |
| VIT_00s0199g00140.t01 | Wine grape | cytosol | 54.9 | 24.1 |
Protein Annotations
| Gene3D:1.20.190.20 | InterPro:14-3-3 | InterPro:14-3-3_CS | InterPro:14-3-3_dom_sf | InterPro:14-3-3_domain | MapMan:35.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0019904 | InterPro:IPR036815 |
| UniProt:K4BPR4 | PFAM:PF00244 | PIRSF:PIRSF000868 | PRINTS:PR00305 | ScanProsite:PS00796 | ScanProsite:PS00797 |
| PANTHER:PTHR18860 | PANTHER:PTHR18860:SF26 | SMART:SM00101 | SUPFAM:SSF48445 | EnsemblPlantsGene:Solyc04g012120.2 | EnsemblPlants:Solyc04g012120.2.1 |
| UniParc:UPI0002766403 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4:-:4428571..4430128
Molecular Weight (calculated)
28796.8 Da
IEP (calculated)
4.449
GRAVY (calculated)
-0.525
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPREENVY MAKLAEQAER YEEMVEFMEK VVAALNGEEL TVEERNLLSV AYKNVIGARR ASWRIISSIE QKEESRGNED HVASIKKYRS QIENELTSIC
101: NGILKLLDSK LIGSAATGDS KVFYLKMKGD YYRYLAEFKT GTERKEAAEN TLSAYKSAQD IANGELAPTH PIRLGLALNF SVFYYEILNS PDRACNLAKQ
201: AFDEAIAELD TLGEESYKDS TLIMQLLRDN LTLWTSDMQD DGTDEIKEPS KADNE
101: NGILKLLDSK LIGSAATGDS KVFYLKMKGD YYRYLAEFKT GTERKEAAEN TLSAYKSAQD IANGELAPTH PIRLGLALNF SVFYYEILNS PDRACNLAKQ
201: AFDEAIAELD TLGEESYKDS TLIMQLLRDN LTLWTSDMQD DGTDEIKEPS KADNE
001: MASGREEFVY MAKLAEQAER YEEMVEFMEK VSAAVDGDEL TVEERNLLSV AYKNVIGARR ASWRIISSIE QKEESRGNDD HVTAIREYRS KIETELSGIC
101: DGILKLLDSR LIPAAASGDS KVFYLKMKGD YHRYLAEFKT GQERKDAAEH TLAAYKSAQD IANAELAPTH PIRLGLALNF SVFYYEILNS PDRACNLAKQ
201: AFDEAIAELD TLGEESYKDS TLIMQLLRDN LTLWTSDMQD DAADEIKEAA APKPTEEQQ
101: DGILKLLDSR LIPAAASGDS KVFYLKMKGD YHRYLAEFKT GQERKDAAEH TLAAYKSAQD IANAELAPTH PIRLGLALNF SVFYYEILNS PDRACNLAKQ
201: AFDEAIAELD TLGEESYKDS TLIMQLLRDN LTLWTSDMQD DAADEIKEAA APKPTEEQQ
Arabidopsis Description
GRF214-3-3-like protein GF14 omega [Source:UniProtKB/Swiss-Prot;Acc:Q01525]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.