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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 4
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
EpiLoc:nucleus
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g099320.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G59220.1 Solyc01g099320.2.1 AT1G09030.1 17322342
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400031088 Potato cytosol 86.97 96.96
VIT_05s0062g01190.t01 Wine grape cytosol, nucleus, peroxisome 72.12 80.95
VIT_05s0094g00610.t01 Wine grape cytosol 25.45 77.78
Solyc09g098160.2.1 Tomato mitochondrion 68.18 77.32
GSMUA_Achr10P... Banana cytosol 66.36 73.49
GSMUA_Achr9P01680_001 Banana cytosol 66.06 73.4
HORVU5Hr1G092220.3 Barley mitochondrion, peroxisome 28.79 73.08
GSMUA_Achr3P02460_001 Banana cytosol 65.15 72.88
TraesCS4A01G336100.1 Wheat nucleus 64.85 72.79
TraesCS5B01G535900.1 Wheat plastid 64.55 72.45
VIT_09s0096g00130.t01 Wine grape cytosol, nucleus, plastid 21.82 72.0
TraesCS5D01G533200.1 Wheat cytosol, mitochondrion, nucleus, plastid 63.33 71.82
TraesCS5D01G533400.1 Wheat cytosol 63.94 71.77
TraesCS5D01G533500.1 Wheat plastid 64.85 71.1
Bra004746.1-P Field mustard plastid 61.21 68.24
Bra000289.1-P Field mustard cytosol 60.91 68.14
CDY55513 Canola plastid 60.91 67.91
KRH46866 Soybean plastid 66.67 67.69
KRH01821 Soybean plastid 66.36 67.59
GSMUA_Achr3P11020_001 Banana cytosol 61.52 67.44
CDY17721 Canola mitochondrion 39.09 65.82
CDX83501 Canola mitochondrion 62.73 64.69
CDY17946 Canola mitochondrion 62.12 64.47
Zm00001d008595_P001 Maize plastid 64.55 64.35
TraesCS4A01G335900.1 Wheat plastid 57.27 64.29
EER96962 Sorghum cytosol 56.97 63.95
CDY42802 Canola mitochondrion 61.82 63.55
HORVU5Hr1G120790.2 Barley cytosol 63.33 63.53
AT3G59220.1 Thale cress cytosol 55.15 63.41
Zm00001d020915_P002 Maize cytosol 56.36 62.84
OQU90634 Sorghum mitochondrion 67.27 62.18
Os09t0484800-01 Rice cytosol, mitochondrion 55.76 61.95
TraesCS5D01G270300.1 Wheat cytosol 56.67 61.72
TraesCS5B01G261100.1 Wheat mitochondrion 56.67 61.31
Os03t0845000-01 Rice plasma membrane 66.97 61.22
HORVU5Hr1G072760.2 Barley mitochondrion 56.06 61.06
CDX67787 Canola nucleus 50.0 60.89
AT3G59260.1 Thale cress cytosol 49.7 60.52
TraesCS5A01G262700.1 Wheat mitochondrion 56.97 59.87
CDX98356 Canola cytosol 46.97 58.71
Zm00001d009514_P001 Maize cytosol, endoplasmic reticulum 17.58 58.59
TraesCS5B01G536000.2 Wheat plastid 65.15 58.11
Solyc12g014590.1.1 Tomato mitochondrion 57.58 58.1
TraesCS4A01G336200.2 Wheat plastid 64.85 57.84
TraesCS5B01G535700.3 Wheat plastid 64.55 57.72
TraesCS4A01G336000.2 Wheat nucleus 57.88 57.7
TraesCS5B01G535800.1 Wheat plastid 64.85 57.53
Bra014547.1-P Field mustard nucleus 50.3 57.24
TraesCS5D01G533100.1 Wheat plastid 65.15 57.03
CDX89016 Canola nucleus 50.0 56.9
Zm00001d034829_P001 Maize mitochondrion 65.15 56.73
AT2G43120.2 Thale cress nucleus 63.64 56.45
CDY00611 Canola nucleus 49.39 56.4
CDY06016 Canola cytosol 45.45 56.18
Bra007437.1-P Field mustard cytosol 33.33 56.12
Bra003367.1-P Field mustard cytosol 32.42 56.02
CDY06015 Canola cytosol 47.88 55.63
CDY57499 Canola cytoskeleton, cytosol, nucleus 51.21 54.69
HORVU5Hr1G120780.3 Barley plastid 63.33 54.43
CDY57498 Canola cytosol 45.76 54.32
Solyc07g065160.2.1 Tomato mitochondrion 46.06 51.01
HORVU5Hr1G120800.4 Barley plastid 66.97 49.77
Zm00001d046171_P001 Maize endoplasmic reticulum, mitochondrion, nucleus, plastid 30.3 49.75
Bra007438.1-P Field mustard cytosol 27.88 49.73
TraesCS1B01G420000.1 Wheat plastid 49.39 45.28
Os08t0364900-00 Rice plastid 48.18 45.17
TraesCS1D01G400000.1 Wheat plastid 48.18 44.17
TraesCS1A01G391900.1 Wheat plastid 48.18 43.92
HORVU5Hr1G120810.1 Barley plastid 30.61 40.56
HORVU1Hr1G086450.3 Barley endoplasmic reticulum, plastid 47.58 39.45
EES14882 Sorghum cytosol, plastid 45.15 39.42
Zm00001d032363_P001 Maize cytosol 43.03 37.87
VIT_09s0096g00380.t01 Wine grape nucleus 13.64 32.14
Protein Annotations
EnsemblPlants:Solyc09g098180.2.1EnsemblPlantsGene:Solyc09g098180.2Gene3D:2.60.120.10InterPro:IPR014710InterPro:PirinInterPro:Pirin_C_dom
InterPro:Pirin_N_domInterPro:RmlC-like_jellyrollInterPro:RmlC_Cupin_sfPANTHER:PTHR13903PANTHER:PTHR13903:SF5PFAM:PF02678
PFAM:PF05726PIRSF:PIRSF006232SUPFAM:SSF51182UniParc:UPI000276C163UniProt:K4CWY8MapMan:35.1
Description
No Description!
Coordinates
chr9:-:72049572..72052614
Molecular Weight (calculated)
37149.4 Da
IEP (calculated)
7.380
GRAVY (calculated)
-0.372
Length
330 amino acids
Sequence
(BLAST)
001: MRAISELFLV KIFPFVRNKK VSRKPIFFPI RNINMSESNQ YDSCFDRPRL VIKKVLAKPQ SEGNGAVVRR SIGRHELRNL DPFLMLDEFS VSAPAGFPDH
101: PHRGFETVTY MLQGAFTHQD FAGHKGTINT GDVQWMTAGR GIIHSEMPAG EGSQKGLQLW INLSSKDKMI EPRYQELLKE DIPRAENDGV KVKVIAGEAM
201: GVQSPVYTQT PTMYLDFTLQ PTAYYHQAIP ESWNAFVYIV EGEGVFGIPS SGPVSAHHCL VLGPGEGLSV WNKSSKPLRF VLLGGQPLNE PVVQHGPFVM
301: NSQDEIDQTF EDYQYCKNGF ENARYWRSGH
Best Arabidopsis Sequence Match ( AT2G43120.2 )
(BLAST)
001: MAHNQFKDSL DPLSSINRHT ESQHQNTSKI RLLPRKATKK KKREEKTTLK YMRAAINRAN SLGGLFSFRF IRNIKSMSSS TSQDFVSRPV IKKVFAKLQK
101: EGDGAVVRRG ISRSEQKLLD PFLMLDEFSV SPPAGFPDHP HRGFETVTYV LEGGITHQDF KGHKGTIYAG DVQWMTAGRG IIHSEMPEEE VNKGLQLWIN
201: LSSNEKMIEP NYQELSHSDI PKAEQNGVEV KVIAGESMGI QSPVYTRTPT MFLDFTLQPG AQIHQNVPES WNAFAYILES GEGGGVFSSS NSSPIPAHSV
301: VVFGPGNDGV SVWNKSSSKQ LRFVLIAGEP IGEPVVQYGP FVMNTQAEID MTIEDYHYGK NGFEMAKYWR SQ
Arabidopsis Description
RmlC-like cupins superfamily protein [Source:TAIR;Acc:AT2G43120]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.