Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
- golgi 1
- extracellular 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67787 | Canola | nucleus | 78.97 | 78.97 |
| CDX98356 | Canola | cytosol | 74.17 | 76.14 |
| Bra003367.1-P | Field mustard | cytosol | 47.6 | 67.54 |
| AT3G59220.1 | Thale cress | cytosol | 70.48 | 66.55 |
| VIT_05s0094g00610.t01 | Wine grape | cytosol | 23.62 | 59.26 |
| VIT_05s0062g01190.t01 | Wine grape | cytosol, nucleus, peroxisome | 61.99 | 57.14 |
| PGSC0003DMT400031088 | Potato | cytosol | 60.89 | 55.74 |
| PGSC0003DMT400031070 | Potato | mitochondrion | 56.46 | 53.12 |
| Solyc09g098160.2.1 | Tomato | mitochondrion | 56.83 | 52.92 |
| TraesCS5D01G533400.1 | Wheat | cytosol | 56.09 | 51.7 |
| TraesCS4A01G336100.1 | Wheat | nucleus | 55.35 | 51.02 |
| GSMUA_Achr10P... | Banana | cytosol | 56.09 | 51.01 |
| TraesCS5D01G533200.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 54.61 | 50.86 |
| AT2G43120.2 | Thale cress | nucleus | 69.74 | 50.81 |
| KRH46866 | Soybean | plastid | 60.89 | 50.77 |
| EER96962 | Sorghum | cytosol | 54.98 | 50.68 |
| GSMUA_Achr3P02460_001 | Banana | cytosol | 54.98 | 50.51 |
| Os09t0484800-01 | Rice | cytosol, mitochondrion | 55.35 | 50.51 |
| TraesCS5B01G535900.1 | Wheat | plastid | 54.61 | 50.34 |
| KRH01821 | Soybean | plastid | 60.15 | 50.31 |
| TraesCS5D01G533500.1 | Wheat | plastid | 55.35 | 49.83 |
| GSMUA_Achr9P01680_001 | Banana | cytosol | 54.61 | 49.83 |
| Solyc09g098180.2.1 | Tomato | plastid | 60.52 | 49.7 |
| GSMUA_Achr3P11020_001 | Banana | cytosol | 54.98 | 49.5 |
| Zm00001d020915_P002 | Maize | cytosol | 53.14 | 48.65 |
| TraesCS5B01G261100.1 | Wheat | mitochondrion | 53.51 | 47.54 |
| TraesCS5D01G270300.1 | Wheat | cytosol | 53.14 | 47.52 |
| HORVU5Hr1G072760.2 | Barley | mitochondrion | 52.4 | 46.86 |
| Zm00001d008595_P001 | Maize | plastid | 56.83 | 46.53 |
| HORVU5Hr1G092220.3 | Barley | mitochondrion, peroxisome | 22.14 | 46.15 |
| AT1G50590.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 52.77 | 46.13 |
| TraesCS5A01G262700.1 | Wheat | mitochondrion | 53.14 | 45.86 |
| HORVU5Hr1G120790.2 | Barley | cytosol | 55.35 | 45.59 |
| TraesCS4A01G335900.1 | Wheat | plastid | 49.45 | 45.58 |
| Zm00001d009514_P001 | Maize | cytosol, endoplasmic reticulum | 16.61 | 45.45 |
| OQU90634 | Sorghum | mitochondrion | 55.72 | 42.3 |
| Os03t0845000-01 | Rice | plasma membrane | 56.09 | 42.11 |
| TraesCS5B01G536000.2 | Wheat | plastid | 55.35 | 40.54 |
| TraesCS5B01G535700.3 | Wheat | plastid | 54.98 | 40.38 |
| TraesCS4A01G336200.2 | Wheat | plastid | 54.98 | 40.27 |
| TraesCS4A01G336000.2 | Wheat | nucleus | 49.08 | 40.18 |
| TraesCS5B01G535800.1 | Wheat | plastid | 54.98 | 40.05 |
| Zm00001d034829_P001 | Maize | mitochondrion | 55.35 | 39.58 |
| TraesCS5D01G533100.1 | Wheat | plastid | 54.61 | 39.26 |
| HORVU5Hr1G120780.3 | Barley | plastid | 53.87 | 38.02 |
| Os08t0364900-00 | Rice | plastid | 48.71 | 37.5 |
| TraesCS1B01G420000.1 | Wheat | plastid | 48.71 | 36.67 |
| Zm00001d046171_P001 | Maize | endoplasmic reticulum, mitochondrion, nucleus, plastid | 26.94 | 36.32 |
| TraesCS1D01G400000.1 | Wheat | plastid | 47.6 | 35.83 |
| TraesCS1A01G391900.1 | Wheat | plastid | 47.6 | 35.64 |
| VIT_09s0096g00130.t01 | Wine grape | cytosol, nucleus, plastid | 12.92 | 35.0 |
| HORVU5Hr1G120800.4 | Barley | plastid | 56.09 | 34.23 |
| EES14882 | Sorghum | cytosol, plastid | 45.39 | 32.54 |
| Zm00001d032363_P001 | Maize | cytosol | 45.02 | 32.53 |
| HORVU1Hr1G086450.3 | Barley | endoplasmic reticulum, plastid | 47.23 | 32.16 |
| HORVU5Hr1G120810.1 | Barley | plastid | 27.68 | 30.12 |
| VIT_09s0096g00380.t01 | Wine grape | nucleus | 5.54 | 10.71 |
Protein Annotations
| Gene3D:2.60.120.10 | MapMan:35.1 | EntrezGene:825095 | ProteinID:AEE79897.1 | ArrayExpress:AT3G59260 | EnsemblPlantsGene:AT3G59260 |
| RefSeq:AT3G59260 | TAIR:AT3G59260 | RefSeq:AT3G59260-TAIR-G | EnsemblPlants:AT3G59260.1 | TAIR:AT3G59260.1 | Unigene:At.54003 |
| ProteinID:CAB91596.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:IPR014710 |
| RefSeq:NP_191485.1 | PFAM:PF02678 | PFAM:PF05726 | PIRSF:PIRSF006232 | PANTHER:PTHR13903 | PANTHER:PTHR13903:SF5 |
| InterPro:Pirin | InterPro:Pirin_C_dom | InterPro:Pirin_N_dom | UniProt:Q9LX45 | InterPro:RmlC-like_jellyroll | InterPro:RmlC_Cupin_sf |
| SUPFAM:SSF51182 | UniParc:UPI0000131B17 | : | : | : | : |
Description
Putative pirin-like protein At3g59260 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX45]
Coordinates
chr3:+:21903839..21905188
Molecular Weight (calculated)
29823.2 Da
IEP (calculated)
4.642
GRAVY (calculated)
-0.278
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MKVMVLSLGK ASPSKSDHEL LDPFVSLVEF SVSPPGGFKD HPHRGFESVT YMFQGGIIHQ DCNGNKGTIH EGDVQWMTAG RGIIHSEMPE EQVNKGLQLW
101: INLPSSAKMI EPKNIEISSS EIPSADDYGV EVKVIAGESM GVKSPFYTKT PIMFLDFTLD PKAQTHQAVP ESWTAFAYIV EGDEGVFSSS DSSTVQAHNV
201: VVFGTGDEVS VWNTSNSRPL RFLLIAGEPI GEPVVQHGPF VMNSQDEIEM TIGDYRNGMN GFEMAKHWRS E
101: INLPSSAKMI EPKNIEISSS EIPSADDYGV EVKVIAGESM GVKSPFYTKT PIMFLDFTLD PKAQTHQAVP ESWTAFAYIV EGDEGVFSSS DSSTVQAHNV
201: VVFGTGDEVS VWNTSNSRPL RFLLIAGEPI GEPVVQHGPF VMNSQDEIEM TIGDYRNGMN GFEMAKHWRS E
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.