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Wine grape
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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:
  • cytosol 2
  • nucleus 3
  • mitochondrion 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, peroxisome
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:cytosol
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:peroxisome
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
VIT_01s0010g01910.t01
VIT_01s0010g01940.t01
VIT_14s0060g02660.t01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G59220.1 VIT_01s0010g01910.t01 AT1G09030.1 17322342
AT3G59220.1 VIT_01s0010g01940.t01 AT1G09030.1 17322342
AT3G59220.1 VIT_14s0060g02660.t01 AT1G09030.1 17322342
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_09s0096g00130.t01 Wine grape cytosol, nucleus, plastid 30.27 89.0
VIT_05s0094g00610.t01 Wine grape cytosol 31.63 86.11
PGSC0003DMT400031088 Potato cytosol 81.63 81.08
GSMUA_Achr9P01680_001 Banana cytosol 77.21 76.43
Solyc09g098160.2.1 Tomato mitochondrion 75.51 76.29
PGSC0003DMT400031070 Potato mitochondrion 73.81 75.35
GSMUA_Achr10P... Banana cytosol 75.51 74.5
KRH01821 Soybean plastid 81.63 74.07
KRH46866 Soybean plastid 80.95 73.23
GSMUA_Achr3P02460_001 Banana cytosol 72.79 72.54
TraesCS5B01G535900.1 Wheat plastid 72.45 72.45
Bra004746.1-P Field mustard plastid 72.79 72.3
Bra000289.1-P Field mustard cytosol 72.45 72.2
Solyc09g098180.2.1 Tomato plastid 80.95 72.12
TraesCS4A01G336100.1 Wheat nucleus 71.77 71.77
TraesCS5D01G533400.1 Wheat cytosol 71.77 71.77
CDY55513 Canola plastid 72.11 71.62
TraesCS5D01G533200.1 Wheat cytosol, mitochondrion, nucleus, plastid 70.07 70.79
HORVU5Hr1G092220.3 Barley mitochondrion, peroxisome 31.29 70.77
VIT_19s0090g01530.t01 Wine grape cytosol 71.43 70.47
TraesCS5D01G533500.1 Wheat plastid 71.09 69.44
CDY17946 Canola mitochondrion 73.47 67.92
GSMUA_Achr3P11020_001 Banana cytosol 69.39 67.77
CDY42802 Canola mitochondrion 73.47 67.29
CDX83501 Canola mitochondrion 72.45 66.56
AT3G59220.1 Thale cress cytosol 62.93 64.46
CDY17721 Canola mitochondrion 42.86 64.29
EER96962 Sorghum cytosol 63.95 63.95
Os09t0484800-01 Rice cytosol, mitochondrion 64.29 63.64
TraesCS4A01G335900.1 Wheat plastid 62.93 62.93
HORVU5Hr1G120790.2 Barley cytosol 70.41 62.92
TraesCS5B01G261100.1 Wheat mitochondrion 64.97 62.62
Zm00001d020915_P002 Maize cytosol 62.93 62.5
Zm00001d008595_P001 Maize plastid 70.07 62.24
HORVU5Hr1G072760.2 Barley mitochondrion 63.95 62.05
TraesCS5D01G270300.1 Wheat cytosol 63.95 62.05
AT3G59260.1 Thale cress cytosol 57.14 61.99
CDX67787 Canola nucleus 56.8 61.62
Zm00001d009514_P001 Maize cytosol, endoplasmic reticulum 20.41 60.61
CDX98356 Canola cytosol 54.08 60.23
TraesCS5A01G262700.1 Wheat mitochondrion 64.29 60.19
Os03t0845000-01 Rice plasma membrane 73.81 60.11
OQU90634 Sorghum mitochondrion 71.09 58.54
CDX89016 Canola nucleus 57.48 58.28
AT2G43120.2 Thale cress nucleus 73.47 58.06
Bra014547.1-P Field mustard nucleus 56.8 57.59
CDY06015 Canola cytosol 55.44 57.39
Bra007437.1-P Field mustard cytosol 38.1 57.14
TraesCS4A01G336200.2 Wheat plastid 71.09 56.49
TraesCS5B01G536000.2 Wheat plastid 71.09 56.49
CDY00611 Canola nucleus 55.44 56.4
CDY06016 Canola cytosol 51.02 56.18
TraesCS5B01G535700.3 Wheat plastid 70.41 56.1
Bra003367.1-P Field mustard cytosol 36.39 56.02
TraesCS5D01G533100.1 Wheat plastid 71.09 55.44
CDY57498 Canola cytosol 52.38 55.4
TraesCS5B01G535800.1 Wheat plastid 70.07 55.38
TraesCS4A01G336000.2 Wheat nucleus 62.24 55.29
CDY57499 Canola cytoskeleton, cytosol, nucleus 57.48 54.69
HORVU5Hr1G120780.3 Barley plastid 71.09 54.43
Zm00001d034829_P001 Maize mitochondrion 70.07 54.35
Bra007438.1-P Field mustard cytosol 32.99 52.43
HORVU5Hr1G120800.4 Barley plastid 72.45 47.97
Zm00001d046171_P001 Maize endoplasmic reticulum, mitochondrion, nucleus, plastid 32.31 47.26
Os08t0364900-00 Rice plastid 52.72 44.03
TraesCS1B01G420000.1 Wheat plastid 52.38 42.78
VIT_09s0096g00380.t01 Wine grape nucleus 20.07 42.14
TraesCS1D01G400000.1 Wheat plastid 51.36 41.94
HORVU5Hr1G120810.1 Barley plastid 35.37 41.77
TraesCS1A01G391900.1 Wheat plastid 51.36 41.71
EES14882 Sorghum cytosol, plastid 50.0 38.89
Zm00001d032363_P001 Maize cytosol 47.62 37.33
HORVU1Hr1G086450.3 Barley endoplasmic reticulum, plastid 50.34 37.19
Protein Annotations
EntrezGene:100251428wikigene:100251428EntrezGene:100254895wikigene:100254895Gene3D:2.60.120.10MapMan:35.1
ProteinID:CBI39450ProteinID:CBI39450.3UniProt:D7U9N6EMBL:FN596745InterPro:IPR014710EntrezGene:LOC100251428
wikigene:LOC100251428EntrezGene:LOC100254895wikigene:LOC100254895PFAM:PF02678PFAM:PF05726PIRSF:PIRSF006232
PANTHER:PTHR13903PANTHER:PTHR13903:SF5InterPro:PirinInterPro:Pirin_C_domInterPro:Pirin_N_domInterPro:RmlC-like_jellyroll
InterPro:RmlC_Cupin_sfSUPFAM:SSF51182UniParc:UPI00015CC0FCArrayExpress:VIT_05s0062g01190EnsemblPlantsGene:VIT_05s0062g01190EnsemblPlants:VIT_05s0062g01190.t01
unigene:Vvi.18543RefSeq:XP_002268298RefSeq:XP_002268298.1RefSeq:XP_003632885RefSeq:XP_003632885.1:
Description
No Description!
Coordinates
chr5:-:19949555..19951435
Molecular Weight (calculated)
32833.1 Da
IEP (calculated)
6.687
GRAVY (calculated)
-0.451
Length
294 amino acids
Sequence
(BLAST)
001: MSGSDHSSGF DQPRLVVKKV LAKPQREGEG AVVRRSIGRS ELKNLDPFLM LDEFAVAPPA GFPDHPHRGF ETVTYMLQGA FTHQDFAGHK GTIRTGDVQW
101: MTAGRGIIHS EMPADEGTQK GLQLWINLAS KDKMIEPNYQ ELPSEDIKRA EKDGVEVRVI AGESMGVRSP VYTRTPTMYL DFTLKPRAQM HQSIPESWNS
201: FVYIVEGEGV FGVVNSSPVT AHHVLVLGPG DGLSAWNKSS KPLRFVLIGG QPLNEPVVQY GPFVMNTQKE IEQTIEDYHY SKNGFEMAKY WRSQ
Best Arabidopsis Sequence Match ( AT2G43120.2 )
(BLAST)
001: MAHNQFKDSL DPLSSINRHT ESQHQNTSKI RLLPRKATKK KKREEKTTLK YMRAAINRAN SLGGLFSFRF IRNIKSMSSS TSQDFVSRPV IKKVFAKLQK
101: EGDGAVVRRG ISRSEQKLLD PFLMLDEFSV SPPAGFPDHP HRGFETVTYV LEGGITHQDF KGHKGTIYAG DVQWMTAGRG IIHSEMPEEE VNKGLQLWIN
201: LSSNEKMIEP NYQELSHSDI PKAEQNGVEV KVIAGESMGI QSPVYTRTPT MFLDFTLQPG AQIHQNVPES WNAFAYILES GEGGGVFSSS NSSPIPAHSV
301: VVFGPGNDGV SVWNKSSSKQ LRFVLIAGEP IGEPVVQYGP FVMNTQAEID MTIEDYHYGK NGFEMAKYWR SQ
Arabidopsis Description
RmlC-like cupins superfamily protein [Source:TAIR;Acc:AT2G43120]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.