CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06015	Canola	cytosol	94.96	92.96
CDX67787	Canola	nucleus	67.63	69.37
CDX98356	Canola	cytosol	65.47	68.94
CDY55513	Canola	plastid	62.59	58.78
CDY06016	Canola	cytosol	55.4	57.68
CDY42802	Canola	mitochondrion	64.75	56.07
CDY00611	Canola	nucleus	58.27	56.06
CDX89016	Canola	nucleus	58.27	55.86
CDX83501	Canola	mitochondrion	63.67	55.31
CDY17946	Canola	mitochondrion	62.95	55.03
CDY57499	Canola	cytoskeleton, cytosol, nucleus	61.15	55.02
VIT_05s0062g01190.t01	Wine grape	cytosol, nucleus, peroxisome	55.4	52.38
PGSC0003DMT400031088	Potato	cytosol	54.68	51.35
CDY17721	Canola	mitochondrion	35.97	51.02
EER96962	Sorghum	cytosol	53.6	50.68
Solyc09g098160.2.1	Tomato	mitochondrion	52.88	50.52
PGSC0003DMT400031070	Potato	mitochondrion	52.16	50.35
Os09t0484800-01	Rice	cytosol, mitochondrion	53.6	50.17
GSMUA_Achr3P11020_001	Banana	cytosol	53.6	49.5
GSMUA_Achr3P02460_001	Banana	cytosol	52.16	49.15
VIT_05s0094g00610.t01	Wine grape	cytosol	19.06	49.07
TraesCS5B01G535900.1	Wheat	plastid	51.8	48.98
TraesCS5D01G533400.1	Wheat	cytosol	51.8	48.98
TraesCS5D01G533200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	51.08	48.8
Zm00001d020915_P002	Maize	cytosol	51.8	48.65
TraesCS4A01G336100.1	Wheat	nucleus	51.44	48.64
KRH01821	Soybean	plastid	55.76	47.84
HORVU5Hr1G092220.3	Barley	mitochondrion, peroxisome	22.3	47.69
KRH46866	Soybean	plastid	55.76	47.69
GSMUA_Achr10P...	Banana	cytosol	51.08	47.65
TraesCS5D01G533500.1	Wheat	plastid	51.44	47.51
GSMUA_Achr9P01680_001	Banana	cytosol	50.36	47.14
TraesCS5B01G261100.1	Wheat	mitochondrion	50.36	45.9
Solyc09g098180.2.1	Tomato	plastid	54.32	45.76
TraesCS5D01G270300.1	Wheat	cytosol	49.64	45.54
HORVU5Hr1G072760.2	Barley	mitochondrion	49.64	45.54
Zm00001d008595_P001	Maize	plastid	52.88	44.41
HORVU5Hr1G120790.2	Barley	cytosol	52.52	44.38
CDY22806	Canola	cytosol	49.28	44.05
CDY37125	Canola	cytosol	49.28	44.05
TraesCS5A01G262700.1	Wheat	mitochondrion	49.64	43.95
TraesCS4A01G335900.1	Wheat	plastid	46.4	43.88
Os03t0845000-01	Rice	plasma membrane	54.32	41.83
OQU90634	Sorghum	mitochondrion	52.52	40.9
Zm00001d009514_P001	Maize	cytosol, endoplasmic reticulum	14.39	40.4
TraesCS4A01G336000.2	Wheat	nucleus	47.84	40.18
TraesCS5B01G535700.3	Wheat	plastid	52.16	39.3
TraesCS5B01G535800.1	Wheat	plastid	52.16	38.98
TraesCS5B01G536000.2	Wheat	plastid	51.8	38.92
TraesCS4A01G336200.2	Wheat	plastid	51.44	38.65
Zm00001d034829_P001	Maize	mitochondrion	52.52	38.52
TraesCS5D01G533100.1	Wheat	plastid	51.8	38.2
VIT_09s0096g00130.t01	Wine grape	cytosol, nucleus, plastid	13.67	38.0
HORVU5Hr1G120780.3	Barley	plastid	51.44	37.24
Os08t0364900-00	Rice	plastid	47.12	37.22
TraesCS1B01G420000.1	Wheat	plastid	47.84	36.94
TraesCS1A01G391900.1	Wheat	plastid	47.48	36.46
TraesCS1D01G400000.1	Wheat	plastid	46.76	36.11
HORVU1Hr1G086450.3	Barley	endoplasmic reticulum, plastid	47.84	33.42
HORVU5Hr1G120800.4	Barley	plastid	52.52	32.88
EES14882	Sorghum	cytosol, plastid	43.88	32.28
Zm00001d032363_P001	Maize	cytosol	42.81	31.73
Zm00001d046171_P001	Maize	endoplasmic reticulum, mitochondrion, nucleus, plastid	22.3	30.85
HORVU5Hr1G120810.1	Barley	plastid	25.18	28.11
VIT_09s0096g00380.t01	Wine grape	nucleus	7.91	15.71

Protein Annotations

EnsemblPlants:CDY57498	EnsemblPlantsGene:GSBRNA2T00022283001	Gene3D:2.60.120.10	InterPro:IPR014710	InterPro:Pirin	InterPro:Pirin_C_dom
InterPro:Pirin_N_dom	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	PANTHER:PTHR13903	PANTHER:PTHR13903:SF5	PFAM:PF02678
PFAM:PF05726	PIRSF:PIRSF006232	ProteinID:CDY57498	ProteinID:CDY57498.1	SUPFAM:SSF51182	UniParc:UPI0004EF06FD
UniProt:A0A078J2A5	MapMan:35.1	:	:	:	:

Description

BnaC08g48910DBnaC08g48910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J2A5]

Coordinates

chrLK033581:-:32498..33855

Molecular Weight (calculated)

30888.4 Da

IEP (calculated)

4.990

GRAVY (calculated)

-0.268

Length

278 amino acids

Sequence
(BLAST)

001: MSSRQVVKKI FANFENSNDG VIRQGITKSD HELLDPFVSL AEFSVSPPGG FRDHPHRGFE SVTYMLEVRN KPHFNGNKGT VHEGDVLWTT AGRGIIHSEM
101: PKEHSNIGLQ LWVNLPSSDK MIDPANVEIS SSEMPVAYEE GVEVKVIAGV SMGVQSPFYT RTPIMFLDII LQPRSQTHQT IPETWTAFAY VLDGNEGVFG
201: SSDSYAVQAH TLVVFGAGDE VSVWNTSNYR PLRFLLIAGE PIGESVVQHG PFVMNTQAEI DRTIWDYRNG QNGFEMAN

Best Arabidopsis Sequence Match ( AT3G59260.1 )
(BLAST)

001: MKVMVLSLGK ASPSKSDHEL LDPFVSLVEF SVSPPGGFKD HPHRGFESVT YMFQGGIIHQ DCNGNKGTIH EGDVQWMTAG RGIIHSEMPE EQVNKGLQLW
101: INLPSSAKMI EPKNIEISSS EIPSADDYGV EVKVIAGESM GVKSPFYTKT PIMFLDFTLD PKAQTHQAVP ESWTAFAYIV EGDEGVFSSS DSSTVQAHNV
201: VVFGTGDEVS VWNTSNSRPL RFLLIAGEPI GEPVVQHGPF VMNSQDEIEM TIGDYRNGMN GFEMAKHWRS E

Arabidopsis Description

Putative pirin-like protein At3g59260 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX45]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.