CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22806	Canola	cytosol	98.07	98.07
Bra018859.1-P	Field mustard	cytosol	96.78	96.78
AT1G50590.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	87.78	88.06
HORVU5Hr1G092220.3	Barley	mitochondrion, peroxisome	29.9	71.54
PGSC0003DMT400033425	Potato	mitochondrion	65.92	69.97
KRH73851	Soybean	cytoskeleton, cytosol, nucleus	65.59	67.77
KRH14295	Soybean	cytosol	65.59	67.77
VIT_19s0090g01530.t01	Wine grape	cytosol	64.31	67.11
EER96962	Sorghum	cytosol	63.02	66.67
KRH46283	Soybean	mitochondrion	63.34	66.11
Zm00001d020915_P002	Maize	cytosol	62.06	65.2
Os09t0484800-01	Rice	cytosol, mitochondrion	62.06	64.98
HORVU5Hr1G072760.2	Barley	mitochondrion	62.38	64.03
TraesCS5B01G261100.1	Wheat	mitochondrion	62.7	63.93
KRG98621	Soybean	nucleus	46.62	63.88
GSMUA_Achr3P11020_001	Banana	cytosol	61.41	63.46
TraesCS5D01G270300.1	Wheat	cytosol	61.74	63.37
GSMUA_Achr3P02460_001	Banana	cytosol	59.81	63.05
TraesCS5A01G262700.1	Wheat	mitochondrion	62.38	61.78
GSMUA_Achr9P01680_001	Banana	cytosol	58.84	61.62
Solyc12g014590.1.1	Tomato	mitochondrion	64.31	61.16
GSMUA_Achr10P...	Banana	cytosol	57.88	60.4
TraesCS5B01G535900.1	Wheat	plastid	56.91	60.2
TraesCS5D01G533200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	55.31	59.11
TraesCS5D01G533400.1	Wheat	cytosol	55.63	58.84
TraesCS4A01G336100.1	Wheat	nucleus	55.63	58.84
TraesCS5D01G533500.1	Wheat	plastid	55.63	57.48
CDY55513	Canola	plastid	54.34	57.09
CDX83501	Canola	mitochondrion	55.95	54.38
CDY17721	Canola	mitochondrion	34.08	54.08
CDY42802	Canola	mitochondrion	55.63	53.89
CDY17946	Canola	mitochondrion	54.98	53.77
TraesCS4A01G335900.1	Wheat	plastid	49.52	52.38
HORVU5Hr1G120790.2	Barley	cytosol	55.31	52.28
Zm00001d008595_P001	Maize	plastid	55.63	52.27
Os03t0845000-01	Rice	plasma membrane	59.16	50.97
CDX67787	Canola	nucleus	43.73	50.18
CDY06015	Canola	cytosol	45.66	50.0
PGSC0003DMT400057126	Potato	cytosol, mitochondrion, nucleus, plastid	47.27	49.33
Solyc07g065160.2.1	Tomato	mitochondrion	47.27	49.33
OQU90634	Sorghum	mitochondrion	56.59	49.3
CDY57498	Canola	cytosol	44.05	49.28
CDX89016	Canola	nucleus	45.66	48.97
CDX98356	Canola	cytosol	41.16	48.48
TraesCS4A01G336000.2	Wheat	nucleus	50.8	47.73
Zm00001d009514_P001	Maize	cytosol, endoplasmic reticulum	15.11	47.47
CDY00611	Canola	nucleus	43.73	47.06
TraesCS5B01G536000.2	Wheat	plastid	55.95	47.03
TraesCS4A01G336200.2	Wheat	plastid	55.63	46.76
TraesCS5B01G535800.1	Wheat	plastid	55.63	46.51
CDY06016	Canola	cytosol	39.87	46.44
TraesCS5B01G535700.3	Wheat	plastid	54.98	46.34
TraesCS5D01G533100.1	Wheat	plastid	55.63	45.89
Zm00001d034829_P001	Maize	mitochondrion	54.98	45.12
HORVU5Hr1G120780.3	Barley	plastid	55.63	45.05
CDY57499	Canola	cytoskeleton, cytosol, nucleus	44.37	44.66
Os08t0364900-00	Rice	plastid	45.98	40.62
TraesCS1B01G420000.1	Wheat	plastid	46.62	40.28
HORVU5Hr1G120800.4	Barley	plastid	56.27	39.41
Zm00001d046171_P001	Maize	endoplasmic reticulum, mitochondrion, nucleus, plastid	25.4	39.3
TraesCS1A01G391900.1	Wheat	plastid	45.66	39.23
TraesCS1D01G400000.1	Wheat	plastid	45.02	38.89
Zm00001d032363_P001	Maize	cytosol	44.05	36.53
HORVU5Hr1G120810.1	Barley	plastid	28.94	36.14
EES14882	Sorghum	cytosol, plastid	43.09	35.45
HORVU1Hr1G086450.3	Barley	endoplasmic reticulum, plastid	45.02	35.18

Protein Annotations

EnsemblPlants:CDY37125	EnsemblPlantsGene:GSBRNA2T00063356001	Gene3D:2.60.120.10	InterPro:IPR014710	InterPro:Pirin	InterPro:Pirin_C_dom
InterPro:Pirin_N_dom	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	PANTHER:PTHR13903	PANTHER:PTHR13903:SF5	PFAM:PF02678
PFAM:PF05726	PIRSF:PIRSF006232	ProteinID:CDY37125	ProteinID:CDY37125.1	SUPFAM:SSF51182	UniParc:UPI0004EEBEC4
UniProt:A0A078HFF9	MapMan:35.1	:	:	:	:

Description

BnaC06g03740DBnaC06g03740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HFF9]

Coordinates

chrLK032392:+:175126..176699

Molecular Weight (calculated)

34631.2 Da

IEP (calculated)

6.616

GRAVY (calculated)

-0.339

Length

311 amino acids

Sequence
(BLAST)

001: MMPISEEASG KKRLVVKKLF ARQQHEGFGA VVRRSIGRFE LRYFDPFLVL DEFSVTAPAG FPDHPHRGFE TVTYMLEGEI LHEDCEGHKG VIREGGLQWM
101: TAGKGIVHSE MPSSNGNGTT THNKGLQLWI NLSSKHKLVL PSYQEIESKD IAEAEKDGVR VRIIAGEWNG VKSKICTRTP TVYLDFTLSP GSKISQHIPL
201: HWNAFVYVLQ GHGHFGDARS QHSPASAHHM LILGLGGDRL EAWNGSDSGL PLRFILVSGE PIGEPVVQFG PFVMNTQEEI DQTIDDFENF TNGFEKARHW
301: KSQAASDLGL F

Best Arabidopsis Sequence Match ( AT1G50590.1 )
(BLAST)

001: MPISEKSSAT NTRLVVKKLF ARQLHEGFGA VVRRSIGRFE FRYFDPFLVL DEFSVSAPAG FPDHPHRGFE TVTYMLEGEI LHEDCEGHKG VIREGGLQWM
101: TAGKGIVHSE MPSSNSNGIT HNKGLQLWIN LSSRQKLVEP SYQEIESKDI AETEKDGVRV RVIAGEWNGV KSKICTRTPT MYLDFTLSPG SRISQPIPLH
201: WNAFVYVLQG HGHFGDSKLQ HSAAAAHHLL VLGLGGDMLE AWNGSDSGLP LRFILVAGEP IGEPMVQFGP FVMNTQEEID ETIDDFENFR NGFEKARHWK
301: SQAASALGLF

Arabidopsis Description

Pirin-like protein At1g50590 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPS9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.