CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

cytosol 2
nucleus 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14295	Soybean	cytosol	97.01	97.01
KRH46283	Soybean	mitochondrion	87.04	87.92
KRG98621	Soybean	nucleus	63.12	83.7
HORVU5Hr1G092220.3	Barley	mitochondrion, peroxisome	34.88	80.77
VIT_19s0090g01530.t01	Wine grape	cytosol	79.73	80.54
PGSC0003DMT400033425	Potato	mitochondrion	76.41	78.5
GSMUA_Achr3P11020_001	Banana	cytosol	73.09	73.09
EER96962	Sorghum	cytosol	68.77	70.41
Zm00001d020915_P002	Maize	cytosol	69.1	70.27
TraesCS5D01G270300.1	Wheat	cytosol	69.77	69.31
HORVU5Hr1G072760.2	Barley	mitochondrion	69.77	69.31
Os09t0484800-01	Rice	cytosol, mitochondrion	67.77	68.69
TraesCS5B01G261100.1	Wheat	mitochondrion	69.44	68.52
Solyc12g014590.1.1	Tomato	mitochondrion	74.42	68.5
GSMUA_Achr3P02460_001	Banana	cytosol	65.78	67.12
TraesCS5A01G262700.1	Wheat	mitochondrion	69.77	66.88
CDY22806	Canola	cytosol	68.11	65.92
Bra018859.1-P	Field mustard	cytosol	67.77	65.59
CDY37125	Canola	cytosol	67.77	65.59
GSMUA_Achr10P...	Banana	cytosol	64.45	65.1
AT1G50590.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	66.78	64.84
GSMUA_Achr9P01680_001	Banana	cytosol	63.12	63.97
TraesCS5B01G535900.1	Wheat	plastid	61.79	63.27
TraesCS5D01G533400.1	Wheat	cytosol	61.79	63.27
TraesCS4A01G336100.1	Wheat	nucleus	61.46	62.93
TraesCS5D01G533200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	60.8	62.89
TraesCS5D01G533500.1	Wheat	plastid	60.8	60.8
KRH46866	Soybean	plastid	63.12	58.46
Solyc07g065160.2.1	Tomato	mitochondrion	57.81	58.39
PGSC0003DMT400057126	Potato	cytosol, mitochondrion, nucleus, plastid	57.48	58.05
KRH01821	Soybean	plastid	62.13	57.72
TraesCS4A01G335900.1	Wheat	plastid	54.82	56.12
HORVU5Hr1G120790.2	Barley	cytosol	60.8	55.62
Zm00001d008595_P001	Maize	plastid	59.47	54.08
Os03t0845000-01	Rice	plasma membrane	64.78	54.02
OQU90634	Sorghum	mitochondrion	62.46	52.66
Zm00001d009514_P001	Maize	cytosol, endoplasmic reticulum	17.28	52.53
TraesCS4A01G336000.2	Wheat	nucleus	56.15	51.06
TraesCS4A01G336200.2	Wheat	plastid	61.13	49.73
TraesCS5B01G536000.2	Wheat	plastid	61.13	49.73
TraesCS5B01G535800.1	Wheat	plastid	61.13	49.46
TraesCS5B01G535700.3	Wheat	plastid	60.47	49.32
TraesCS5D01G533100.1	Wheat	plastid	60.8	48.54
Zm00001d034829_P001	Maize	mitochondrion	60.13	47.76
HORVU5Hr1G120780.3	Barley	plastid	60.47	47.4
Zm00001d046171_P001	Maize	endoplasmic reticulum, mitochondrion, nucleus, plastid	28.9	43.28
Os08t0364900-00	Rice	plastid	49.83	42.61
HORVU5Hr1G120800.4	Barley	plastid	62.46	42.34
TraesCS1B01G420000.1	Wheat	plastid	50.5	42.22
TraesCS1D01G400000.1	Wheat	plastid	49.5	41.39
TraesCS1A01G391900.1	Wheat	plastid	49.5	41.16
HORVU5Hr1G120810.1	Barley	plastid	32.56	39.36
Zm00001d032363_P001	Maize	cytosol	46.51	37.33
HORVU1Hr1G086450.3	Barley	endoplasmic reticulum, plastid	48.84	36.93
EES14882	Sorghum	cytosol, plastid	46.18	36.77

Protein Annotations

EMBL:ACUP02001288	EnsemblPlants:KRH73851	EnsemblPlantsGene:GLYMA_02G296500	Gene3D:2.60.120.10	InterPro:IPR014710	InterPro:Pirin
InterPro:Pirin_C_dom	InterPro:Pirin_N_dom	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	PANTHER:PTHR13903	PANTHER:PTHR13903:SF5
PFAM:PF02678	PFAM:PF05726	PIRSF:PIRSF006232	ProteinID:KRH73851	ProteinID:KRH73851.1	SUPFAM:SSF51182
UniParc:UPI0002337473	UniProt:I1JJF8	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:47431279..47434536

Molecular Weight (calculated)

33796.4 Da

IEP (calculated)

5.956

GRAVY (calculated)

-0.275

Length

301 amino acids

Sequence
(BLAST)

001: MPDQDICSYI NEPRLVARKF LARPQHEGVG AVVRRSIGRF ELKYFDPFIV LDEFSVTAPA GFPDHPHRGF ETVTYMLQGA ITHEDFEGHK GTIEAGDLQW
101: MTAGRGIVHS EMPAAQGTQK GLQLWINLAS KHKMIEPRYQ EMLSKDIAET MIDGIKVRVI AGEALGIKSP IYTRTPTMYL DFTLKPGAHL QQIIPKSWNA
201: FVYILEGEGV FGNQKSQPVT SHHILLLGSG DGLEAWNKSS KVLRFILVGG EPLGESVVQF GPFVMNTQEE IDQTIDDFEN YTNGFEKARH WRSESAISLD
301: Y

Best Arabidopsis Sequence Match ( AT1G50590.1 )
(BLAST)

001: MPISEKSSAT NTRLVVKKLF ARQLHEGFGA VVRRSIGRFE FRYFDPFLVL DEFSVSAPAG FPDHPHRGFE TVTYMLEGEI LHEDCEGHKG VIREGGLQWM
101: TAGKGIVHSE MPSSNSNGIT HNKGLQLWIN LSSRQKLVEP SYQEIESKDI AETEKDGVRV RVIAGEWNGV KSKICTRTPT MYLDFTLSPG SRISQPIPLH
201: WNAFVYVLQG HGHFGDSKLQ HSAAAAHHLL VLGLGGDMLE AWNGSDSGLP LRFILVAGEP IGEPMVQFGP FVMNTQEEID ETIDDFENFR NGFEKARHWK
301: SQAASALGLF

Arabidopsis Description

Pirin-like protein At1g50590 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPS9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.