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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:
  • plastid 2
  • mitochondrion 3
  • cytosol 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion, nucleus, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Predotar:plastid
PProwler:mitochondrion
WoLF PSORT:mitochondrion
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY22806 Canola cytosol 88.06 87.78
CDY37125 Canola cytosol 88.06 87.78
Bra018859.1-P Field mustard cytosol 87.74 87.46
VIT_19s0090g01530.t01 Wine grape cytosol 65.16 67.79
HORVU5Hr1G092220.3 Barley mitochondrion, peroxisome 28.39 67.69
EER96962 Sorghum cytosol 64.19 67.69
PGSC0003DMT400033425 Potato mitochondrion 63.87 67.58
KRH73851 Soybean cytoskeleton, cytosol, nucleus 64.84 66.78
KRH14295 Soybean cytosol 64.84 66.78
Os09t0484800-01 Rice cytosol, mitochondrion 63.87 66.67
Zm00001d020915_P002 Maize cytosol 63.23 66.22
KRH46283 Soybean mitochondrion 63.23 65.77
TraesCS5B01G261100.1 Wheat mitochondrion 63.87 64.92
HORVU5Hr1G072760.2 Barley mitochondrion 63.23 64.69
TraesCS5D01G270300.1 Wheat cytosol 62.9 64.36
KRG98621 Soybean nucleus 47.1 64.32
GSMUA_Achr3P02460_001 Banana cytosol 60.0 63.05
GSMUA_Achr3P11020_001 Banana cytosol 60.97 62.79
TraesCS5A01G262700.1 Wheat mitochondrion 63.23 62.42
GSMUA_Achr9P01680_001 Banana cytosol 58.06 60.61
GSMUA_Achr10P... Banana cytosol 57.74 60.07
TraesCS5B01G535900.1 Wheat plastid 56.77 59.86
Solyc12g014590.1.1 Tomato mitochondrion 62.58 59.33
TraesCS5D01G533400.1 Wheat cytosol 55.81 58.84
TraesCS4A01G336100.1 Wheat nucleus 55.81 58.84
TraesCS5D01G533200.1 Wheat cytosol, mitochondrion, nucleus, plastid 55.16 58.76
TraesCS5D01G533500.1 Wheat plastid 55.48 57.14
AT3G59220.1 Thale cress cytosol 49.35 53.31
AT3G59260.1 Thale cress cytosol 46.13 52.77
HORVU5Hr1G120790.2 Barley cytosol 55.81 52.58
Zm00001d008595_P001 Maize plastid 56.13 52.57
TraesCS4A01G335900.1 Wheat plastid 49.68 52.38
Os03t0845000-01 Rice plasma membrane 58.71 50.42
OQU90634 Sorghum mitochondrion 57.74 50.14
Solyc07g065160.2.1 Tomato mitochondrion 47.42 49.33
PGSC0003DMT400057126 Potato cytosol, mitochondrion, nucleus, plastid 47.1 48.99
Zm00001d009514_P001 Maize cytosol, endoplasmic reticulum 15.48 48.48
TraesCS4A01G336000.2 Wheat nucleus 50.65 47.43
TraesCS5B01G536000.2 Wheat plastid 55.81 46.76
AT2G43120.2 Thale cress nucleus 55.81 46.51
TraesCS4A01G336200.2 Wheat plastid 55.48 46.49
TraesCS5B01G535700.3 Wheat plastid 54.84 46.07
TraesCS5B01G535800.1 Wheat plastid 55.16 45.97
Zm00001d034829_P001 Maize mitochondrion 55.81 45.65
TraesCS5D01G533100.1 Wheat plastid 55.48 45.62
HORVU5Hr1G120780.3 Barley plastid 55.16 44.53
Os08t0364900-00 Rice plastid 46.77 41.19
TraesCS1B01G420000.1 Wheat plastid 47.74 41.11
TraesCS1A01G391900.1 Wheat plastid 46.77 40.06
TraesCS1D01G400000.1 Wheat plastid 46.45 40.0
Zm00001d046171_P001 Maize endoplasmic reticulum, mitochondrion, nucleus, plastid 25.81 39.8
HORVU5Hr1G120800.4 Barley plastid 55.81 38.96
Zm00001d032363_P001 Maize cytosol 45.16 37.33
EES14882 Sorghum cytosol, plastid 45.16 37.04
HORVU5Hr1G120810.1 Barley plastid 29.03 36.14
HORVU1Hr1G086450.3 Barley endoplasmic reticulum, plastid 46.13 35.93
Protein Annotations
Gene3D:2.60.120.10MapMan:35.1EntrezGene:841481ProteinID:AAF87876.1ProteinID:AAG51187.1ProteinID:AEE32567.1
ArrayExpress:AT1G50590EnsemblPlantsGene:AT1G50590RefSeq:AT1G50590TAIR:AT1G50590RefSeq:AT1G50590-TAIR-GEnsemblPlants:AT1G50590.1
TAIR:AT1G50590.1EMBL:BT033103GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0008150InterPro:IPR014710RefSeq:NP_175474.1PFAM:PF02678PFAM:PF05726PIRSF:PIRSF006232
PO:PO:0000013PO:PO:0000037PO:PO:0000084PO:PO:0000230PO:PO:0000293PO:PO:0001054
PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095
PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616
PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025
PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047
PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022
PANTHER:PTHR13903PANTHER:PTHR13903:SF5InterPro:PirinInterPro:Pirin_C_domInterPro:Pirin_N_domUniProt:Q9LPS9
InterPro:RmlC-like_jellyrollInterPro:RmlC_Cupin_sfSUPFAM:SSF51182UniParc:UPI0000131B14SEG:seg:
Description
Pirin-like protein At1g50590 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPS9]
Coordinates
chr1:-:18732378..18734199
Molecular Weight (calculated)
34549.1 Da
IEP (calculated)
6.394
GRAVY (calculated)
-0.282
Length
310 amino acids
Sequence
(BLAST)
001: MPISEKSSAT NTRLVVKKLF ARQLHEGFGA VVRRSIGRFE FRYFDPFLVL DEFSVSAPAG FPDHPHRGFE TVTYMLEGEI LHEDCEGHKG VIREGGLQWM
101: TAGKGIVHSE MPSSNSNGIT HNKGLQLWIN LSSRQKLVEP SYQEIESKDI AETEKDGVRV RVIAGEWNGV KSKICTRTPT MYLDFTLSPG SRISQPIPLH
201: WNAFVYVLQG HGHFGDSKLQ HSAAAAHHLL VLGLGGDMLE AWNGSDSGLP LRFILVAGEP IGEPMVQFGP FVMNTQEEID ETIDDFENFR NGFEKARHWK
301: SQAASALGLF
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.