Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr8P21910_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G59220.1 | GSMUA_Achr8P21910_001 | AT1G09030.1 | 17322342 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P01680_001 | Banana | cytosol | 83.89 | 84.18 |
| GSMUA_Achr3P02460_001 | Banana | cytosol | 81.88 | 82.71 |
| VIT_05s0062g01190.t01 | Wine grape | cytosol, nucleus, peroxisome | 74.5 | 75.51 |
| PGSC0003DMT400031088 | Potato | cytosol | 72.82 | 73.31 |
| TraesCS4A01G336100.1 | Wheat | nucleus | 71.48 | 72.45 |
| VIT_05s0094g00610.t01 | Wine grape | cytosol | 26.17 | 72.22 |
| TraesCS5B01G535900.1 | Wheat | plastid | 70.13 | 71.09 |
| TraesCS5D01G533200.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 69.13 | 70.79 |
| TraesCS5D01G533400.1 | Wheat | cytosol | 69.8 | 70.75 |
| PGSC0003DMT400031070 | Potato | mitochondrion | 67.79 | 70.14 |
| Solyc09g098160.2.1 | Tomato | mitochondrion | 68.46 | 70.1 |
| TraesCS5D01G533500.1 | Wheat | plastid | 70.13 | 69.44 |
| VIT_19s0090g01530.t01 | Wine grape | cytosol | 67.11 | 67.11 |
| Solyc09g098180.2.1 | Tomato | plastid | 73.49 | 66.36 |
| KRH01821 | Soybean | plastid | 71.81 | 66.05 |
| Bra004746.1-P | Field mustard | plastid | 65.1 | 65.54 |
| CDY55513 | Canola | plastid | 65.1 | 65.54 |
| PGSC0003DMT400033425 | Potato | mitochondrion | 64.09 | 65.19 |
| KRH14295 | Soybean | cytosol | 65.77 | 65.12 |
| VIT_09s0096g00130.t01 | Wine grape | cytosol, nucleus, plastid | 21.81 | 65.0 |
| GSMUA_Achr3P11020_001 | Banana | cytosol | 65.44 | 64.78 |
| KRH73851 | Soybean | cytoskeleton, cytosol, nucleus | 65.1 | 64.45 |
| Bra000289.1-P | Field mustard | cytosol | 63.42 | 64.07 |
| KRH46866 | Soybean | plastid | 69.8 | 64.0 |
| TraesCS4A01G335900.1 | Wheat | plastid | 62.75 | 63.61 |
| KRH46283 | Soybean | mitochondrion | 63.42 | 63.42 |
| HORVU5Hr1G120790.2 | Barley | cytosol | 69.8 | 63.22 |
| Zm00001d008595_P001 | Maize | plastid | 69.8 | 62.84 |
| Os03t0845000-01 | Rice | plasma membrane | 73.83 | 60.94 |
| CDY17946 | Canola | mitochondrion | 64.77 | 60.69 |
| KRG98621 | Soybean | nucleus | 45.97 | 60.35 |
| CDX83501 | Canola | mitochondrion | 64.43 | 60.0 |
| AT3G59220.1 | Thale cress | cytosol | 57.72 | 59.93 |
| CDY42802 | Canola | mitochondrion | 63.76 | 59.19 |
| Solyc12g014590.1.1 | Tomato | mitochondrion | 64.43 | 58.72 |
| OQU90634 | Sorghum | mitochondrion | 70.13 | 58.54 |
| Bra018859.1-P | Field mustard | cytosol | 60.74 | 58.2 |
| CDY22806 | Canola | cytosol | 60.74 | 58.2 |
| CDY17721 | Canola | mitochondrion | 38.26 | 58.16 |
| CDY37125 | Canola | cytosol | 60.4 | 57.88 |
| AT1G50590.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 60.07 | 57.74 |
| CDX67787 | Canola | nucleus | 52.01 | 57.2 |
| TraesCS4A01G336000.2 | Wheat | nucleus | 63.09 | 56.8 |
| TraesCS5B01G536000.2 | Wheat | plastid | 69.8 | 56.22 |
| AT3G59260.1 | Thale cress | cytosol | 51.01 | 56.09 |
| CDX98356 | Canola | cytosol | 49.33 | 55.68 |
| TraesCS5B01G535700.3 | Wheat | plastid | 68.79 | 55.56 |
| TraesCS4A01G336200.2 | Wheat | plastid | 68.79 | 55.41 |
| TraesCS5B01G535800.1 | Wheat | plastid | 69.13 | 55.38 |
| CDX89016 | Canola | nucleus | 53.69 | 55.17 |
| TraesCS5D01G533100.1 | Wheat | plastid | 69.46 | 54.91 |
| Bra014547.1-P | Field mustard | nucleus | 53.02 | 54.48 |
| HORVU5Hr1G120780.3 | Barley | plastid | 70.13 | 54.43 |
| Zm00001d034829_P001 | Maize | mitochondrion | 69.13 | 54.35 |
| CDY06016 | Canola | cytosol | 48.32 | 53.93 |
| Zm00001d009514_P001 | Maize | cytosol, endoplasmic reticulum | 17.79 | 53.54 |
| Bra007437.1-P | Field mustard | cytosol | 34.9 | 53.06 |
| CDY00611 | Canola | nucleus | 51.34 | 52.94 |
| CDY06015 | Canola | cytosol | 50.0 | 52.46 |
| CDY57499 | Canola | cytoskeleton, cytosol, nucleus | 54.36 | 52.43 |
| AT2G43120.2 | Thale cress | nucleus | 65.44 | 52.42 |
| CDY57498 | Canola | cytosol | 47.65 | 51.08 |
| Bra003367.1-P | Field mustard | cytosol | 32.55 | 50.79 |
| Solyc07g065160.2.1 | Tomato | mitochondrion | 50.34 | 50.34 |
| PGSC0003DMT400057126 | Potato | cytosol, mitochondrion, nucleus, plastid | 50.34 | 50.34 |
| HORVU5Hr1G120800.4 | Barley | plastid | 69.8 | 46.85 |
| Zm00001d046171_P001 | Maize | endoplasmic reticulum, mitochondrion, nucleus, plastid | 31.54 | 46.77 |
| Bra007438.1-P | Field mustard | cytosol | 27.85 | 44.86 |
| HORVU5Hr1G120810.1 | Barley | plastid | 34.56 | 41.37 |
| VIT_09s0096g00380.t01 | Wine grape | nucleus | 12.42 | 26.43 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P17090_001 | EnsemblPlants:GSMUA_Achr10T17090_001 | EnsemblPlantsGene:GSMUA_Achr10G17090_001 | Gene3D:2.60.120.10 | InterPro:IPR014710 | InterPro:Pirin |
| InterPro:Pirin_C_dom | InterPro:Pirin_N_dom | InterPro:RmlC-like_jellyroll | InterPro:RmlC_Cupin_sf | PANTHER:PTHR13903 | PANTHER:PTHR13903:SF5 |
| PFAM:PF02678 | PFAM:PF05726 | PIRSF:PIRSF006232 | SEG:seg | SUPFAM:SSF51182 | UniParc:UPI0002951219 |
| UniProt:M0RIY4 | MapMan:35.1 | : | : | : | : |
Description
Pirin-like protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G17090_001]
Coordinates
chr10:-:24424557..24426339
Molecular Weight (calculated)
33138.1 Da
IEP (calculated)
6.654
GRAVY (calculated)
-0.535
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDHETPSFE KPRHVAKKVL ARSQQEGVGA SVRRSIGSGA LRNLDPFLML DEFSVSAPAG FPDHPHRGFE TVTYMLQGAS THQDFAGHKG TIRAGDLQWM
101: TAGRGIIHSE MPADEGENTG LQLWINLSSK DKMMAPRYQE LQSKDISRVE KDGVDVRIIA GESFGVRSPV YTQTPTMYLD FTLQPGAQVH QRVPEDWNAF
201: VYILEGEGVF GDPKASPATS HHTLVLSPGD GLSVWNRSAK PLRFVLIGGQ PLNEPIVQNG PFVMTTQAEI QKAIEDYHYC KNGFENARHW RSQQQQQQ
101: TAGRGIIHSE MPADEGENTG LQLWINLSSK DKMMAPRYQE LQSKDISRVE KDGVDVRIIA GESFGVRSPV YTQTPTMYLD FTLQPGAQVH QRVPEDWNAF
201: VYILEGEGVF GDPKASPATS HHTLVLSPGD GLSVWNRSAK PLRFVLIGGQ PLNEPIVQNG PFVMTTQAEI QKAIEDYHYC KNGFENARHW RSQQQQQQ
001: MAHNQFKDSL DPLSSINRHT ESQHQNTSKI RLLPRKATKK KKREEKTTLK YMRAAINRAN SLGGLFSFRF IRNIKSMSSS TSQDFVSRPV IKKVFAKLQK
101: EGDGAVVRRG ISRSEQKLLD PFLMLDEFSV SPPAGFPDHP HRGFETVTYV LEGGITHQDF KGHKGTIYAG DVQWMTAGRG IIHSEMPEEE VNKGLQLWIN
201: LSSNEKMIEP NYQELSHSDI PKAEQNGVEV KVIAGESMGI QSPVYTRTPT MFLDFTLQPG AQIHQNVPES WNAFAYILES GEGGGVFSSS NSSPIPAHSV
301: VVFGPGNDGV SVWNKSSSKQ LRFVLIAGEP IGEPVVQYGP FVMNTQAEID MTIEDYHYGK NGFEMAKYWR SQ
101: EGDGAVVRRG ISRSEQKLLD PFLMLDEFSV SPPAGFPDHP HRGFETVTYV LEGGITHQDF KGHKGTIYAG DVQWMTAGRG IIHSEMPEEE VNKGLQLWIN
201: LSSNEKMIEP NYQELSHSDI PKAEQNGVEV KVIAGESMGI QSPVYTRTPT MFLDFTLQPG AQIHQNVPES WNAFAYILES GEGGGVFSSS NSSPIPAHSV
301: VVFGPGNDGV SVWNKSSSKQ LRFVLIAGEP IGEPVVQYGP FVMNTQAEID MTIEDYHYGK NGFEMAKYWR SQ
Arabidopsis Description
RmlC-like cupins superfamily protein [Source:TAIR;Acc:AT2G43120]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.