Factsheet for TraesCS5B01G536000.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	golgi, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G457000.1
TraesCS3D01G450000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59220.1	TraesCS3A01G457000.1	AT1G09030.1	17322342
AT3G59220.1	TraesCS3D01G450000.1	AT1G09030.1	17322342

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G533500.1	Wheat	plastid	79.73	98.01
TraesCS4A01G336200.2	Wheat	plastid	97.84	97.84
TraesCS5B01G535900.1	Wheat	plastid	73.78	92.86
TraesCS5B01G535800.1	Wheat	plastid	84.59	84.14
TraesCS5B01G535700.3	Wheat	plastid	75.68	75.88
VIT_05s0094g00610.t01	Wine grape	cytosol	21.35	73.15
PGSC0003DMT400031088	Potato	cytosol	57.3	71.62
Os03t0845000-01	Rice	plasma membrane	69.46	71.19
VIT_05s0062g01190.t01	Wine grape	cytosol, nucleus, peroxisome	56.49	71.09
GSMUA_Achr3P02460_001	Banana	cytosol	56.49	70.85
Solyc09g098160.2.1	Tomato	mitochondrion	55.68	70.79
GSMUA_Achr9P01680_001	Banana	cytosol	56.76	70.71
Zm00001d008595_P001	Maize	plastid	63.24	70.69
HORVU5Hr1G120800.4	Barley	plastid	83.78	69.82
GSMUA_Achr10P...	Banana	cytosol	56.22	69.8
PGSC0003DMT400031070	Potato	mitochondrion	53.78	69.1
OQU90634	Sorghum	mitochondrion	66.22	68.63
VIT_19s0090g01530.t01	Wine grape	cytosol	52.7	65.44
Solyc09g098180.2.1	Tomato	plastid	58.11	65.15
Zm00001d034829_P001	Maize	mitochondrion	65.95	64.38
KRH46866	Soybean	plastid	55.14	62.77
KRH01821	Soybean	plastid	54.86	62.65
PGSC0003DMT400033425	Potato	mitochondrion	49.46	62.46
VIT_09s0096g00130.t01	Wine grape	cytosol, nucleus, plastid	16.76	62.0
KRH46283	Soybean	mitochondrion	49.73	61.74
KRH14295	Soybean	cytosol	50.0	61.46
CDY55513	Canola	plastid	48.92	61.15
Bra004746.1-P	Field mustard	plastid	48.92	61.15
KRH73851	Soybean	cytoskeleton, cytosol, nucleus	49.73	61.13
Bra000289.1-P	Field mustard	cytosol	48.38	60.68
Zm00001d009514_P001	Maize	cytosol, endoplasmic reticulum	16.22	60.61
TraesCS5B01G261100.1	Wheat	mitochondrion	49.73	60.33
KRG98621	Soybean	nucleus	36.76	59.91
CDY17721	Canola	mitochondrion	31.62	59.69
AT3G59220.1	Thale cress	cytosol	45.68	58.88
CDY17946	Canola	mitochondrion	50.0	58.18
CDX83501	Canola	mitochondrion	50.0	57.81
CDY22806	Canola	cytosol	47.3	56.27
CDY42802	Canola	mitochondrion	48.65	56.07
CDY37125	Canola	cytosol	47.03	55.95
AT1G50590.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	46.76	55.81
Bra018859.1-P	Field mustard	cytosol	46.76	55.63
AT3G59260.1	Thale cress	cytosol	40.54	55.35
Solyc12g014590.1.1	Tomato	mitochondrion	48.65	55.05
CDX67787	Canola	nucleus	40.0	54.61
CDX89016	Canola	nucleus	42.16	53.79
CDX98356	Canola	cytosol	38.38	53.79
CDY06016	Canola	cytosol	38.11	52.81
Bra014547.1-P	Field mustard	nucleus	41.08	52.41
CDY06015	Canola	cytosol	40.0	52.11
CDY00611	Canola	nucleus	40.54	51.9
CDY57498	Canola	cytosol	38.92	51.8
CDY57499	Canola	cytoskeleton, cytosol, nucleus	42.97	51.46
Bra007437.1-P	Field mustard	cytosol	27.03	51.02
AT2G43120.2	Thale cress	nucleus	49.73	49.46
Zm00001d046171_P001	Maize	endoplasmic reticulum, mitochondrion, nucleus, plastid	26.76	49.25
Solyc07g065160.2.1	Tomato	mitochondrion	38.92	48.32
Bra003367.1-P	Field mustard	cytosol	24.86	48.17
PGSC0003DMT400057126	Potato	cytosol, mitochondrion, nucleus, plastid	38.38	47.65
TraesCS1B01G420000.1	Wheat	plastid	45.68	46.94
Bra007438.1-P	Field mustard	cytosol	23.24	46.49
VIT_09s0096g00380.t01	Wine grape	nucleus	11.08	29.29

Protein Annotations

EnsemblPlants:TraesCS5B01G536000.2	EnsemblPlantsGene:TraesCS5B01G536000	Gene3D:2.60.120.10	InterPro:IPR014710	InterPro:Pirin	InterPro:Pirin_C_dom
InterPro:Pirin_N_dom	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	PANTHER:PTHR13903	PANTHER:PTHR13903:SF5	PFAM:PF02678
PFAM:PF05726	PIRSF:PIRSF006232	SEG:seg	SUPFAM:SSF51182	TMHMM:TMhelix	MapMan:35.1

Description

No Description!

Coordinates

chr5B:-:691941681..691943252

Molecular Weight (calculated)

40041.8 Da

IEP (calculated)

9.262

GRAVY (calculated)

-0.127

Length

370 amino acids

Sequence
(BLAST)

001: MPRHSAASPI YTALARLANF NSGRRVLLAS RNTSSSSARS SAKTRPFLCL SVLLLLILVV TAVFLFPPAI MSSSSSSAAT AASVPFQSPR KVVKKVLSLS
101: QSEGQGATVR RSIGGHEVRN LDPFLLLDEF SVSKPAGFPD HPHRGFETVT YMLDGVFTHQ DFSGHTGTIR TGDVQWMTAG RGIVHSEMPA ADGVQKGLQL
201: WINLASKDKM IEPRYQELES KDISQAEKDG VAVRIIAGEA FGVRSPVYTR TPTMYMDFTV QPGSQLHQPI PEGWNAFVYI IEGEGVFGKE GAAPASAHHC
301: LVLGAGDGLS VWNRSGAPLR FALAAGQPLN EPVVQQGPFV MNSRAQIQQA MEDYYYGRNG FEKASQWSSA

Best Arabidopsis Sequence Match ( AT1G50590.1 )
(BLAST)

001: MPISEKSSAT NTRLVVKKLF ARQLHEGFGA VVRRSIGRFE FRYFDPFLVL DEFSVSAPAG FPDHPHRGFE TVTYMLEGEI LHEDCEGHKG VIREGGLQWM
101: TAGKGIVHSE MPSSNSNGIT HNKGLQLWIN LSSRQKLVEP SYQEIESKDI AETEKDGVRV RVIAGEWNGV KSKICTRTPT MYLDFTLSPG SRISQPIPLH
201: WNAFVYVLQG HGHFGDSKLQ HSAAAAHHLL VLGLGGDMLE AWNGSDSGLP LRFILVAGEP IGEPMVQFGP FVMNTQEEID ETIDDFENFR NGFEKARHWK
301: SQAASALGLF

Arabidopsis Description

Pirin-like protein At1g50590 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPS9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.