CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
cytoskeleton 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, cytosol, nucleus
Any Predictor:	cytoskeleton, cytosol, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX95014

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59220.1	CDX95014	AT1G09030.1	17322342

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007437.1-P	Field mustard	cytosol	61.81	97.45
CDY06016	Canola	cytosol	83.82	97.0
CDX89016	Canola	nucleus	77.99	83.1
AT3G59220.1	Thale cress	cytosol	76.38	82.23
CDY00611	Canola	nucleus	74.43	79.58
CDX67787	Canola	nucleus	60.84	69.37
CDX98356	Canola	cytosol	56.96	66.67
CDY55513	Canola	plastid	61.81	64.53
CDY42802	Canola	mitochondrion	64.08	61.68
CDY17946	Canola	mitochondrion	63.43	61.64
CDX83501	Canola	mitochondrion	63.75	61.56
CDY06015	Canola	cytosol	56.31	61.27
CDY57498	Canola	cytosol	55.02	61.15
CDY17721	Canola	mitochondrion	37.22	58.67
VIT_05s0094g00610.t01	Wine grape	cytosol	20.39	58.33
VIT_05s0062g01190.t01	Wine grape	cytosol, nucleus, peroxisome	54.69	57.48
PGSC0003DMT400031088	Potato	cytosol	54.69	57.09
HORVU5Hr1G092220.3	Barley	mitochondrion, peroxisome	22.98	54.62
PGSC0003DMT400031070	Potato	mitochondrion	50.81	54.51
GSMUA_Achr10P...	Banana	cytosol	52.43	54.36
Solyc09g098160.2.1	Tomato	mitochondrion	51.13	54.3
GSMUA_Achr3P02460_001	Banana	cytosol	51.13	53.56
GSMUA_Achr9P01680_001	Banana	cytosol	51.13	53.2
TraesCS5D01G533500.1	Wheat	plastid	51.46	52.82
TraesCS5B01G535900.1	Wheat	plastid	50.16	52.72
TraesCS5D01G533400.1	Wheat	cytosol	50.16	52.72
TraesCS4A01G336100.1	Wheat	nucleus	50.16	52.72
TraesCS5D01G533200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	49.19	52.23
KRH01821	Soybean	plastid	53.72	51.23
Solyc09g098180.2.1	Tomato	plastid	54.69	51.21
Os09t0484800-01	Rice	cytosol, mitochondrion	49.19	51.18
EER96962	Sorghum	cytosol	48.54	51.02
KRH46866	Soybean	plastid	53.4	50.77
Zm00001d020915_P002	Maize	cytosol	47.25	49.32
GSMUA_Achr3P11020_001	Banana	cytosol	47.9	49.17
HORVU5Hr1G072760.2	Barley	mitochondrion	47.57	48.51
Zm00001d008595_P001	Maize	plastid	51.78	48.34
TraesCS5B01G261100.1	Wheat	mitochondrion	47.57	48.2
TraesCS4A01G335900.1	Wheat	plastid	45.63	47.96
TraesCS5D01G270300.1	Wheat	cytosol	46.6	47.52
HORVU5Hr1G120790.2	Barley	cytosol	50.16	47.11
TraesCS5A01G262700.1	Wheat	mitochondrion	47.25	46.5
OQU90634	Sorghum	mitochondrion	53.07	45.94
CDY37125	Canola	cytosol	44.66	44.37
CDY22806	Canola	cytosol	44.66	44.37
Os03t0845000-01	Rice	plasma membrane	51.78	44.32
VIT_09s0096g00130.t01	Wine grape	cytosol, nucleus, plastid	13.92	43.0
TraesCS5B01G536000.2	Wheat	plastid	51.46	42.97
Zm00001d034829_P001	Maize	mitochondrion	52.1	42.48
TraesCS4A01G336200.2	Wheat	plastid	50.81	42.43
TraesCS5B01G535700.3	Wheat	plastid	49.84	41.73
TraesCS4A01G336000.2	Wheat	nucleus	44.66	41.69
TraesCS5B01G535800.1	Wheat	plastid	49.84	41.4
TraesCS5D01G533100.1	Wheat	plastid	50.16	41.11
HORVU5Hr1G120780.3	Barley	plastid	49.51	39.84
Zm00001d009514_P001	Maize	cytosol, endoplasmic reticulum	12.62	39.39
Os08t0364900-00	Rice	plastid	44.34	38.92
TraesCS1B01G420000.1	Wheat	plastid	45.31	38.89
TraesCS1A01G391900.1	Wheat	plastid	44.34	37.85
TraesCS1D01G400000.1	Wheat	plastid	44.01	37.78
Zm00001d046171_P001	Maize	endoplasmic reticulum, mitochondrion, nucleus, plastid	23.3	35.82
HORVU5Hr1G120800.4	Barley	plastid	51.46	35.81
HORVU1Hr1G086450.3	Barley	endoplasmic reticulum, plastid	43.37	33.67
Zm00001d032363_P001	Maize	cytosol	39.16	32.27
HORVU5Hr1G120810.1	Barley	plastid	25.89	32.13
EES14882	Sorghum	cytosol, plastid	38.51	31.48
VIT_09s0096g00380.t01	Wine grape	nucleus	8.09	17.86

Protein Annotations

EnsemblPlants:CDY57499	EnsemblPlantsGene:GSBRNA2T00022284001	Gene3D:2.60.120.10	InterPro:IPR014710	InterPro:Pirin	InterPro:Pirin_C_dom
InterPro:Pirin_N_dom	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	PANTHER:PTHR13903	PANTHER:PTHR13903:SF5	PFAM:PF02678
PFAM:PF05726	PIRSF:PIRSF006232	ProteinID:CDY57499	ProteinID:CDY57499.1	SUPFAM:SSF51182	UniParc:UPI0004EE8FD2
UniProt:A0A078J487	MapMan:35.1	:	:	:	:

Description

BnaC08g48920DBnaC08g48920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J487]

Coordinates

chrLK033581:-:34737..36249

Molecular Weight (calculated)

34243.9 Da

IEP (calculated)

5.076

GRAVY (calculated)

-0.129

Length

309 amino acids

Sequence
(BLAST)

001: MEVEGEENIQ RTTSSFIITM SASCDSDRVT RQVIKNVLAK LQKEGEGALV RNGITEIHQA LLDPFVLLVD FSFSRTAGFA KHPHRGFESV TYMLQGGIIH
101: KYFKGHESTI KAGDVQWMTA GRGIIHSEFP EEEVNNGLQL WINLPSIHRM IEPKNLELSS LEIPRAEKDG VEVKVIAGDS LGIKSPYYTT TPIMFLDFTL
201: KPGSQTHQTV PESWTAFAYI LEGDEGVFGS LNSLAIQAHY VVVFGPGDLV SVWNKSTSRA LRFLLIAGEP IGEPLVQCGP FVMSSQDEID MAFEDYRNAK
301: NGFELAKSS

Best Arabidopsis Sequence Match ( AT3G59220.1 )
(BLAST)

001: MTYENNSVPR IVIKKVLAKL EKEGEGAVVR NGITKIDQKL LDPFVLLVEF SFSLSAGFPD HPHRGFESVT YMLQGGIIHK DPKGHKGTIQ AGDVQWMTAG
101: RGIIHSEFPE EEVNNGLQLW INLPSTEKMT EPKYKELSSL DIPRAEENGV EVKVIAGDSM GIKSPVYTRT PTMFLDFTLK PGSQTHQTVP ESWTAFAYII
201: EGDEGVFGSL NSSAISAHHV VVFGPGDLVS VWNKSTSRSL RFLLIAGEPI GEPVVQCGPF VMNSQAEIDM AFDDYQNAKN GFEMAKC

Arabidopsis Description

PRN1Pirin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX49]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.