CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55513	Canola	plastid	90.25	96.96
CDY42802	Canola	mitochondrion	89.31	88.47
CDX83501	Canola	mitochondrion	88.99	88.44
CDY17721	Canola	mitochondrion	51.89	84.18
AT2G43120.2	Thale cress	nucleus	87.74	75.0
VIT_05s0062g01190.t01	Wine grape	cytosol, nucleus, peroxisome	67.92	73.47
VIT_05s0094g00610.t01	Wine grape	cytosol	24.21	71.3
PGSC0003DMT400031088	Potato	cytosol	64.78	69.59
CDX67787	Canola	nucleus	58.49	68.63
KRH01821	Soybean	plastid	68.24	66.98
PGSC0003DMT400031070	Potato	mitochondrion	60.06	66.32
CDX89016	Canola	nucleus	60.38	66.21
CDY00611	Canola	nucleus	60.06	66.09
CDX98356	Canola	cytosol	54.72	65.91
KRH46866	Soybean	plastid	67.3	65.85
Solyc09g098160.2.1	Tomato	mitochondrion	60.06	65.64
CDY06016	Canola	cytosol	54.4	64.79
CDY06015	Canola	cytosol	57.86	64.79
GSMUA_Achr10P...	Banana	cytosol	60.69	64.77
GSMUA_Achr9P01680_001	Banana	cytosol	60.38	64.65
HORVU5Hr1G092220.3	Barley	mitochondrion, peroxisome	26.42	64.62
TraesCS5B01G535900.1	Wheat	plastid	59.43	64.29
GSMUA_Achr3P02460_001	Banana	cytosol	59.12	63.73
CDY57499	Canola	cytoskeleton, cytosol, nucleus	61.64	63.43
CDY57498	Canola	cytosol	55.03	62.95
TraesCS5D01G533400.1	Wheat	cytosol	58.18	62.93
GSMUA_Achr3P11020_001	Banana	cytosol	59.43	62.79
TraesCS4A01G336100.1	Wheat	nucleus	57.86	62.59
Solyc09g098180.2.1	Tomato	plastid	64.47	62.12
Os09t0484800-01	Rice	cytosol, mitochondrion	57.86	61.95
TraesCS5D01G533200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	56.6	61.86
EER96962	Sorghum	cytosol	56.92	61.56
TraesCS5D01G533500.1	Wheat	plastid	57.86	61.13
VIT_09s0096g00130.t01	Wine grape	cytosol, nucleus, plastid	19.18	61.0
TraesCS5B01G261100.1	Wheat	mitochondrion	57.23	59.67
Zm00001d020915_P002	Maize	cytosol	55.03	59.12
TraesCS5D01G270300.1	Wheat	cytosol	56.29	59.08
HORVU5Hr1G072760.2	Barley	mitochondrion	55.97	58.75
TraesCS5A01G262700.1	Wheat	mitochondrion	56.92	57.64
HORVU5Hr1G120790.2	Barley	cytosol	58.8	56.84
Zm00001d008595_P001	Maize	plastid	59.12	56.8
TraesCS4A01G335900.1	Wheat	plastid	51.26	55.44
CDY22806	Canola	cytosol	53.77	54.98
CDY37125	Canola	cytosol	53.77	54.98
OQU90634	Sorghum	mitochondrion	59.75	53.22
Os03t0845000-01	Rice	plasma membrane	59.75	52.63
Zm00001d009514_P001	Maize	cytosol, endoplasmic reticulum	16.35	52.53
TraesCS4A01G336200.2	Wheat	plastid	58.49	50.27
TraesCS5B01G536000.2	Wheat	plastid	58.18	50.0
TraesCS4A01G336000.2	Wheat	nucleus	51.57	49.55
Zm00001d034829_P001	Maize	mitochondrion	58.8	49.34
TraesCS5D01G533100.1	Wheat	plastid	58.49	49.34
TraesCS5B01G535800.1	Wheat	plastid	57.55	49.19
TraesCS5B01G535700.3	Wheat	plastid	56.92	49.05
HORVU5Hr1G120780.3	Barley	plastid	59.12	48.96
Os08t0364900-00	Rice	plastid	49.37	44.6
Zm00001d046171_P001	Maize	endoplasmic reticulum, mitochondrion, nucleus, plastid	27.67	43.78
TraesCS1B01G420000.1	Wheat	plastid	49.37	43.61
TraesCS1A01G391900.1	Wheat	plastid	48.74	42.82
TraesCS1D01G400000.1	Wheat	plastid	48.11	42.5
HORVU5Hr1G120800.4	Barley	plastid	58.49	41.89
HORVU1Hr1G086450.3	Barley	endoplasmic reticulum, plastid	47.8	38.19
EES14882	Sorghum	cytosol, plastid	45.28	38.1
Zm00001d032363_P001	Maize	cytosol	44.34	37.6
HORVU5Hr1G120810.1	Barley	plastid	28.62	36.55
VIT_09s0096g00380.t01	Wine grape	nucleus	12.26	27.86

Protein Annotations

EnsemblPlants:CDY17946	EnsemblPlantsGene:GSBRNA2T00002305001	Gene3D:2.60.120.10	InterPro:IPR014710	InterPro:Pirin	InterPro:Pirin_C_dom
InterPro:Pirin_N_dom	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	PANTHER:PTHR13903	PANTHER:PTHR13903:SF5	PFAM:PF02678
PFAM:PF05726	PIRSF:PIRSF006232	ProteinID:CDY17946	ProteinID:CDY17946.1	SUPFAM:SSF51182	UniParc:UPI0004EC8AF4
UniProt:A0A078FY52	MapMan:35.1	:	:	:	:

Description

BnaC04g02730DBnaC04g02730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FY52]

Coordinates

chrLK032079:-:727507..729309

Molecular Weight (calculated)

35174.7 Da

IEP (calculated)

6.733

GRAVY (calculated)

-0.336

Length

318 amino acids

Sequence
(BLAST)

001: MRAALNRANF VGGLFSFRNI KSMSSSSTQN FVSRSVIKKV FAKLQKEGDG AVVRRGISRS EQKLLDPFLM LDEFSVSPPA GFPDHPHRGF ETVTYVLEGG
101: ITHQDFKGHK GTIYAGDVQW MTAGRGIIHS EMPEEEINKG LQLWINLSSN KKMIEPNYQE LSSSDIPKAE QDGVQVKVIA GESMGIQSPV YTRTPTMFLD
201: FTLDPGAQFH QKVPESWNAF AYVLESGESG AVFGSSNASP VSAHNVVVFG QGNDGVSVWN KSSSKKLRFV LIAGEPLGEP VVQYGPFVMN TQAEIDMTIE
301: DYHYGKNGFE MAKYWRSQ

Best Arabidopsis Sequence Match ( AT2G43120.2 )
(BLAST)

001: MAHNQFKDSL DPLSSINRHT ESQHQNTSKI RLLPRKATKK KKREEKTTLK YMRAAINRAN SLGGLFSFRF IRNIKSMSSS TSQDFVSRPV IKKVFAKLQK
101: EGDGAVVRRG ISRSEQKLLD PFLMLDEFSV SPPAGFPDHP HRGFETVTYV LEGGITHQDF KGHKGTIYAG DVQWMTAGRG IIHSEMPEEE VNKGLQLWIN
201: LSSNEKMIEP NYQELSHSDI PKAEQNGVEV KVIAGESMGI QSPVYTRTPT MFLDFTLQPG AQIHQNVPES WNAFAYILES GEGGGVFSSS NSSPIPAHSV
301: VVFGPGNDGV SVWNKSSSKQ LRFVLIAGEP IGEPVVQYGP FVMNTQAEID MTIEDYHYGK NGFEMAKYWR SQ

Arabidopsis Description

RmlC-like cupins superfamily protein [Source:TAIR;Acc:AT2G43120]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.