Factsheet for GSMUA_Achr3P02460_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr8P21910_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59220.1	GSMUA_Achr8P21910_001	AT1G09030.1	17322342

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	82.71	81.88
GSMUA_Achr9P01680_001	Banana	cytosol	81.36	80.81
VIT_05s0094g00610.t01	Wine grape	cytosol	26.78	73.15
VIT_05s0062g01190.t01	Wine grape	cytosol, nucleus, peroxisome	72.54	72.79
PGSC0003DMT400031088	Potato	cytosol	72.54	72.3
TraesCS5B01G535900.1	Wheat	plastid	71.53	71.77
PGSC0003DMT400031070	Potato	mitochondrion	69.83	71.53
Solyc09g098160.2.1	Tomato	mitochondrion	70.51	71.48
TraesCS4A01G336100.1	Wheat	nucleus	71.19	71.43
TraesCS5D01G533400.1	Wheat	cytosol	70.51	70.75
TraesCS5D01G533200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	69.49	70.45
TraesCS5D01G533500.1	Wheat	plastid	70.51	69.1
VIT_19s0090g01530.t01	Wine grape	cytosol	68.47	67.79
PGSC0003DMT400033425	Potato	mitochondrion	67.12	67.58
GSMUA_Achr3P11020_001	Banana	cytosol	68.47	67.11
KRH14295	Soybean	cytosol	67.8	66.45
VIT_09s0096g00130.t01	Wine grape	cytosol, nucleus, plastid	22.37	66.0
KRH73851	Soybean	cytoskeleton, cytosol, nucleus	67.12	65.78
Solyc09g098180.2.1	Tomato	plastid	72.88	65.15
Zm00001d008595_P001	Maize	plastid	72.54	64.65
KRH46283	Soybean	mitochondrion	64.75	64.09
TraesCS4A01G335900.1	Wheat	plastid	63.39	63.61
HORVU5Hr1G120790.2	Barley	cytosol	70.85	63.53
CDY55513	Canola	plastid	63.73	63.51
Bra004746.1-P	Field mustard	plastid	63.73	63.51
Bra000289.1-P	Field mustard	cytosol	62.37	62.37
KRH01821	Soybean	plastid	68.47	62.35
Os03t0845000-01	Rice	plasma membrane	76.27	62.33
KRH46866	Soybean	plastid	68.47	62.15
KRG98621	Soybean	nucleus	47.46	61.67
Solyc12g014590.1.1	Tomato	mitochondrion	67.8	61.16
AT3G59220.1	Thale cress	cytosol	58.64	60.28
CDY17721	Canola	mitochondrion	40.0	60.2
CDY22806	Canola	cytosol	63.39	60.13
AT1G50590.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	63.05	60.0
CDY37125	Canola	cytosol	63.05	59.81
Bra018859.1-P	Field mustard	cytosol	63.05	59.81
OQU90634	Sorghum	mitochondrion	72.2	59.66
CDY17946	Canola	mitochondrion	63.73	59.12
CDX83501	Canola	mitochondrion	63.39	58.44
CDY42802	Canola	mitochondrion	62.71	57.63
Zm00001d009514_P001	Maize	cytosol, endoplasmic reticulum	19.32	57.58
TraesCS4A01G336000.2	Wheat	nucleus	64.41	57.4
TraesCS5B01G536000.2	Wheat	plastid	70.85	56.49
TraesCS5B01G535800.1	Wheat	plastid	71.19	56.45
TraesCS5B01G535700.3	Wheat	plastid	70.51	56.37
Zm00001d034829_P001	Maize	mitochondrion	72.2	56.2
CDX67787	Canola	nucleus	51.19	55.72
TraesCS4A01G336200.2	Wheat	plastid	69.83	55.68
AT3G59260.1	Thale cress	cytosol	50.51	54.98
TraesCS5D01G533100.1	Wheat	plastid	70.17	54.91
HORVU5Hr1G120780.3	Barley	plastid	71.19	54.69
CDX89016	Canola	nucleus	53.56	54.48
CDX98356	Canola	cytosol	48.47	54.17
CDY06015	Canola	cytosol	51.86	53.87
Bra014547.1-P	Field mustard	nucleus	52.88	53.79
CDY06016	Canola	cytosol	47.8	52.81
CDY00611	Canola	nucleus	51.53	52.6
CDY57498	Canola	cytosol	49.15	52.16
Bra007437.1-P	Field mustard	cytosol	34.58	52.04
CDY57499	Canola	cytoskeleton, cytosol, nucleus	53.56	51.13
AT2G43120.2	Thale cress	nucleus	64.41	51.08
Solyc07g065160.2.1	Tomato	mitochondrion	51.53	51.01
PGSC0003DMT400057126	Potato	cytosol, mitochondrion, nucleus, plastid	50.85	50.34
Bra003367.1-P	Field mustard	cytosol	32.2	49.74
Zm00001d046171_P001	Maize	endoplasmic reticulum, mitochondrion, nucleus, plastid	33.22	48.76
Bra007438.1-P	Field mustard	cytosol	30.17	48.11
HORVU5Hr1G120800.4	Barley	plastid	70.85	47.07
HORVU5Hr1G120810.1	Barley	plastid	36.61	43.37
VIT_09s0096g00380.t01	Wine grape	nucleus	13.22	27.86

Protein Annotations

EnsemblPlants:GSMUA_Achr3P02460_001	EnsemblPlants:GSMUA_Achr3T02460_001	EnsemblPlantsGene:GSMUA_Achr3G02460_001	Gene3D:2.60.120.10	InterPro:IPR014710	InterPro:Pirin
InterPro:Pirin_C_dom	InterPro:Pirin_N_dom	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	PANTHER:PTHR13903	PANTHER:PTHR13903:SF5
PFAM:PF02678	PFAM:PF05726	PIRSF:PIRSF006232	SUPFAM:SSF51182	UniParc:UPI0002964616	UniProt:M0SB64
MapMan:35.1	:	:	:	:	:

Description

Pirin-like protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G02460_001]

Coordinates

chr3:-:1633792..1635552

Molecular Weight (calculated)

32800.0 Da

IEP (calculated)

6.979

GRAVY (calculated)

-0.493

Length

295 amino acids

Sequence
(BLAST)

001: MGDHETPRIE KPRQVVKKVL ARSQPEGVGA TVRRSIGRAE LRSLDPFLML DEFTVSAPAG FPDHPHRGFE TVTYMLEGAF THQDFAGHKG TIRAGDLQWM
101: TAGRGIVHSE MPAAEGENKG LQLWINLSSK DKMMEPRYQE LQSKDISRVE KDGVDVRIIA GESFGVRSPV YTRTPTMYLD FTLQPGARVD QPIPDSWNAF
201: AYIIEGEGLF GGPEDATAAT SHHALVLGPG DGLIVRNPSA RPLRFVLLGG QPLGEPVVQH GPFVMNTQAE IRRAFEDYQH HKNGFEKARH WRSQP

Best Arabidopsis Sequence Match ( AT2G43120.2 )
(BLAST)

001: MAHNQFKDSL DPLSSINRHT ESQHQNTSKI RLLPRKATKK KKREEKTTLK YMRAAINRAN SLGGLFSFRF IRNIKSMSSS TSQDFVSRPV IKKVFAKLQK
101: EGDGAVVRRG ISRSEQKLLD PFLMLDEFSV SPPAGFPDHP HRGFETVTYV LEGGITHQDF KGHKGTIYAG DVQWMTAGRG IIHSEMPEEE VNKGLQLWIN
201: LSSNEKMIEP NYQELSHSDI PKAEQNGVEV KVIAGESMGI QSPVYTRTPT MFLDFTLQPG AQIHQNVPES WNAFAYILES GEGGGVFSSS NSSPIPAHSV
301: VVFGPGNDGV SVWNKSSSKQ LRFVLIAGEP IGEPVVQYGP FVMNTQAEID MTIEDYHYGK NGFEMAKYWR SQ

Arabidopsis Description

RmlC-like cupins superfamily protein [Source:TAIR;Acc:AT2G43120]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.