Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400063671 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G59220.1 | PGSC0003DMT400063671 | AT1G09030.1 | 17322342 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g098180.2.1 | Tomato | plastid | 96.96 | 86.97 |
| VIT_05s0062g01190.t01 | Wine grape | cytosol, nucleus, peroxisome | 81.08 | 81.63 |
| VIT_05s0094g00610.t01 | Wine grape | cytosol | 28.04 | 76.85 |
| PGSC0003DMT400031070 | Potato | mitochondrion | 73.31 | 75.35 |
| HORVU5Hr1G092220.3 | Barley | mitochondrion, peroxisome | 32.09 | 73.08 |
| GSMUA_Achr9P01680_001 | Banana | cytosol | 73.31 | 73.06 |
| VIT_09s0096g00130.t01 | Wine grape | cytosol, nucleus, plastid | 24.66 | 73.0 |
| GSMUA_Achr10P... | Banana | cytosol | 73.31 | 72.82 |
| GSMUA_Achr3P02460_001 | Banana | cytosol | 72.3 | 72.54 |
| TraesCS5B01G535900.1 | Wheat | plastid | 71.96 | 72.45 |
| TraesCS5D01G533400.1 | Wheat | cytosol | 71.28 | 71.77 |
| TraesCS4A01G336100.1 | Wheat | nucleus | 71.28 | 71.77 |
| TraesCS5D01G533200.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 70.27 | 71.48 |
| TraesCS5D01G533500.1 | Wheat | plastid | 71.62 | 70.43 |
| Bra004746.1-P | Field mustard | plastid | 69.26 | 69.26 |
| Bra000289.1-P | Field mustard | cytosol | 68.92 | 69.15 |
| CDY55513 | Canola | plastid | 68.92 | 68.92 |
| KRH01821 | Soybean | plastid | 73.99 | 67.59 |
| GSMUA_Achr3P11020_001 | Banana | cytosol | 68.58 | 67.44 |
| KRH46866 | Soybean | plastid | 73.65 | 67.08 |
| PGSC0003DMT400033425 | Potato | mitochondrion | 65.2 | 65.87 |
| CDY17721 | Canola | mitochondrion | 43.58 | 65.82 |
| CDX83501 | Canola | mitochondrion | 70.27 | 65.0 |
| AT3G59220.1 | Thale cress | cytosol | 62.84 | 64.81 |
| CDY17946 | Canola | mitochondrion | 69.59 | 64.78 |
| CDY42802 | Canola | mitochondrion | 69.93 | 64.49 |
| Zm00001d008595_P001 | Maize | plastid | 71.62 | 64.05 |
| EER96962 | Sorghum | cytosol | 63.51 | 63.95 |
| TraesCS4A01G335900.1 | Wheat | plastid | 63.18 | 63.61 |
| Zm00001d020915_P002 | Maize | cytosol | 63.18 | 63.18 |
| HORVU5Hr1G120790.2 | Barley | cytosol | 69.93 | 62.92 |
| TraesCS5D01G270300.1 | Wheat | cytosol | 63.51 | 62.05 |
| Os09t0484800-01 | Rice | cytosol, mitochondrion | 62.16 | 61.95 |
| TraesCS5B01G261100.1 | Wheat | mitochondrion | 63.51 | 61.64 |
| HORVU5Hr1G072760.2 | Barley | mitochondrion | 62.84 | 61.39 |
| Os03t0845000-01 | Rice | plasma membrane | 74.66 | 61.22 |
| AT3G59260.1 | Thale cress | cytosol | 55.74 | 60.89 |
| CDX67787 | Canola | nucleus | 55.74 | 60.89 |
| OQU90634 | Sorghum | mitochondrion | 73.31 | 60.78 |
| TraesCS5A01G262700.1 | Wheat | mitochondrion | 63.51 | 59.87 |
| CDX98356 | Canola | cytosol | 52.36 | 58.71 |
| Zm00001d009514_P001 | Maize | cytosol, endoplasmic reticulum | 19.59 | 58.59 |
| Bra014547.1-P | Field mustard | nucleus | 56.42 | 57.59 |
| TraesCS4A01G336000.2 | Wheat | nucleus | 64.19 | 57.4 |
| TraesCS5B01G536000.2 | Wheat | plastid | 71.62 | 57.3 |
| TraesCS4A01G336200.2 | Wheat | plastid | 71.62 | 57.3 |
| CDX89016 | Canola | nucleus | 56.08 | 57.24 |
| TraesCS5B01G535700.3 | Wheat | plastid | 70.95 | 56.91 |
| TraesCS5B01G535800.1 | Wheat | plastid | 71.28 | 56.72 |
| AT2G43120.2 | Thale cress | nucleus | 70.95 | 56.45 |
| CDY00611 | Canola | nucleus | 55.07 | 56.4 |
| TraesCS5D01G533100.1 | Wheat | plastid | 71.62 | 56.23 |
| CDY06016 | Canola | cytosol | 50.68 | 56.18 |
| Bra007437.1-P | Field mustard | cytosol | 37.16 | 56.12 |
| Bra003367.1-P | Field mustard | cytosol | 36.15 | 56.02 |
| CDY06015 | Canola | cytosol | 53.72 | 55.99 |
| Zm00001d034829_P001 | Maize | mitochondrion | 71.62 | 55.94 |
| CDY57499 | Canola | cytoskeleton, cytosol, nucleus | 57.09 | 54.69 |
| CDY57498 | Canola | cytosol | 51.35 | 54.68 |
| HORVU5Hr1G120780.3 | Barley | plastid | 70.27 | 54.17 |
| Bra007438.1-P | Field mustard | cytosol | 31.42 | 50.27 |
| PGSC0003DMT400057126 | Potato | cytosol, mitochondrion, nucleus, plastid | 50.34 | 50.0 |
| Zm00001d046171_P001 | Maize | endoplasmic reticulum, mitochondrion, nucleus, plastid | 33.78 | 49.75 |
| HORVU5Hr1G120800.4 | Barley | plastid | 72.3 | 48.2 |
| TraesCS1B01G420000.1 | Wheat | plastid | 54.73 | 45.0 |
| Os08t0364900-00 | Rice | plastid | 53.04 | 44.6 |
| TraesCS1D01G400000.1 | Wheat | plastid | 53.38 | 43.89 |
| TraesCS1A01G391900.1 | Wheat | plastid | 53.38 | 43.65 |
| HORVU5Hr1G120810.1 | Barley | plastid | 33.45 | 39.76 |
| EES14882 | Sorghum | cytosol, plastid | 50.34 | 39.42 |
| HORVU1Hr1G086450.3 | Barley | endoplasmic reticulum, plastid | 52.7 | 39.2 |
| Zm00001d032363_P001 | Maize | cytosol | 47.97 | 37.87 |
| VIT_09s0096g00380.t01 | Wine grape | nucleus | 15.2 | 32.14 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400031088 | EnsemblPlantsGene:PGSC0003DMG400011910 | Gene3D:2.60.120.10 | InterPro:IPR014710 | InterPro:Pirin | InterPro:Pirin_C_dom |
| InterPro:Pirin_N_dom | InterPro:RmlC-like_jellyroll | InterPro:RmlC_Cupin_sf | PANTHER:PTHR13903 | PANTHER:PTHR13903:SF5 | PFAM:PF02678 |
| PFAM:PF05726 | PGSC:PGSC0003DMG400011910 | PIRSF:PIRSF006232 | SUPFAM:SSF51182 | UniParc:UPI000294CADF | UniProt:M1AV68 |
| MapMan:35.1 | : | : | : | : | : |
Description
Pirin [Source:PGSC_GENE;Acc:PGSC0003DMG400011910]
Coordinates
chr9:-:60926982..60930084
Molecular Weight (calculated)
33018.0 Da
IEP (calculated)
6.284
GRAVY (calculated)
-0.455
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGSNQYDSC FDRPRLVIKK VLAKPQSEGN GAVVRRSIGR HELRNLDPFL MLDEFSVSAP AGFPDHPHRG FETVTYMLQG AFTHQDFAGH KGTINTGDVQ
101: WMTAGRGIIH SEMPAGEGSQ KGLQLWINLS SKDKMIEPRY QELLKEDIPR AENNGVEVKV IAGEAMGVQS PVYTRTPTMY LDFTLQPTAY YHQATPESWN
201: AFVYIVEGEG VFGIPNSGPV SAHHCLVLGP GEGLSVWNKS SKPLRFVLLG GQPLNEPVVQ HGPFVMNSQD EIDQTFEDYQ YCKNGFENAR YWRSGH
101: WMTAGRGIIH SEMPAGEGSQ KGLQLWINLS SKDKMIEPRY QELLKEDIPR AENNGVEVKV IAGEAMGVQS PVYTRTPTMY LDFTLQPTAY YHQATPESWN
201: AFVYIVEGEG VFGIPNSGPV SAHHCLVLGP GEGLSVWNKS SKPLRFVLLG GQPLNEPVVQ HGPFVMNSQD EIDQTFEDYQ YCKNGFENAR YWRSGH
001: MAHNQFKDSL DPLSSINRHT ESQHQNTSKI RLLPRKATKK KKREEKTTLK YMRAAINRAN SLGGLFSFRF IRNIKSMSSS TSQDFVSRPV IKKVFAKLQK
101: EGDGAVVRRG ISRSEQKLLD PFLMLDEFSV SPPAGFPDHP HRGFETVTYV LEGGITHQDF KGHKGTIYAG DVQWMTAGRG IIHSEMPEEE VNKGLQLWIN
201: LSSNEKMIEP NYQELSHSDI PKAEQNGVEV KVIAGESMGI QSPVYTRTPT MFLDFTLQPG AQIHQNVPES WNAFAYILES GEGGGVFSSS NSSPIPAHSV
301: VVFGPGNDGV SVWNKSSSKQ LRFVLIAGEP IGEPVVQYGP FVMNTQAEID MTIEDYHYGK NGFEMAKYWR SQ
101: EGDGAVVRRG ISRSEQKLLD PFLMLDEFSV SPPAGFPDHP HRGFETVTYV LEGGITHQDF KGHKGTIYAG DVQWMTAGRG IIHSEMPEEE VNKGLQLWIN
201: LSSNEKMIEP NYQELSHSDI PKAEQNGVEV KVIAGESMGI QSPVYTRTPT MFLDFTLQPG AQIHQNVPES WNAFAYILES GEGGGVFSSS NSSPIPAHSV
301: VVFGPGNDGV SVWNKSSSKQ LRFVLIAGEP IGEPVVQYGP FVMNTQAEID MTIEDYHYGK NGFEMAKYWR SQ
Arabidopsis Description
RmlC-like cupins superfamily protein [Source:TAIR;Acc:AT2G43120]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.