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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 3
  • mitochondrion 4
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, nucleus, plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:nucleus
 plastid: 22065420
plastid: 23198870
msms PMID: 23198870 doi
M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
msms PMID: 22065420 doi
W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d042197_P001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G59220.1 Zm00001d042197_P001 AT1G09030.1 17322342
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5B01G535900.1 Wheat plastid 70.69 79.59
TraesCS4A01G336100.1 Wheat nucleus 70.09 78.91
TraesCS5D01G533400.1 Wheat cytosol 69.18 77.89
TraesCS5D01G533500.1 Wheat plastid 70.39 77.41
TraesCS5D01G533200.1 Wheat cytosol, mitochondrion, nucleus, plastid 67.67 76.98
OQU90634 Sorghum mitochondrion 79.46 73.67
GSMUA_Achr3P02460_001 Banana cytosol 64.65 72.54
Zm00001d034829_P001 Maize mitochondrion 82.18 71.77
PGSC0003DMT400031088 Potato cytosol 64.05 71.62
TraesCS4A01G335900.1 Wheat plastid 63.14 71.09
Solyc09g098160.2.1 Tomato mitochondrion 61.93 70.45
VIT_05s0062g01190.t01 Wine grape cytosol, nucleus, peroxisome 62.24 70.07
GSMUA_Achr10P... Banana cytosol 62.84 69.8
HORVU5Hr1G120790.2 Barley cytosol 69.18 69.6
PGSC0003DMT400031070 Potato mitochondrion 60.42 69.44
VIT_05s0094g00610.t01 Wine grape cytosol 22.66 69.44
GSMUA_Achr9P01680_001 Banana cytosol 62.24 69.36
Os03t0845000-01 Rice plasma membrane 72.81 66.76
VIT_09s0096g00130.t01 Wine grape cytosol, nucleus, plastid 19.64 65.0
Solyc09g098180.2.1 Tomato plastid 64.35 64.55
VIT_19s0090g01530.t01 Wine grape cytosol 57.7 64.09
TraesCS5B01G536000.2 Wheat plastid 70.69 63.24
Zm00001d020915_P002 Maize cytosol 56.5 63.18
TraesCS4A01G336200.2 Wheat plastid 70.39 62.97
KRH01821 Soybean plastid 61.33 62.65
KRH46866 Soybean plastid 61.33 62.46
TraesCS5B01G535800.1 Wheat plastid 70.09 62.37
TraesCS5B01G535700.3 Wheat plastid 69.18 62.06
Bra004746.1-P Field mustard plastid 55.29 61.82
Bra000289.1-P Field mustard cytosol 54.98 61.69
TraesCS4A01G336000.2 Wheat nucleus 61.63 61.63
PGSC0003DMT400033425 Potato mitochondrion 54.38 61.43
TraesCS5D01G533100.1 Wheat plastid 69.79 61.27
CDY55513 Canola plastid 54.68 61.15
CDY17721 Canola mitochondrion 35.65 60.2
HORVU5Hr1G120780.3 Barley plastid 69.49 59.9
Zm00001d009514_P001 Maize cytosol, endoplasmic reticulum 17.82 59.6
KRH73851 Soybean cytoskeleton, cytosol, nucleus 54.08 59.47
KRH14295 Soybean cytosol 53.78 59.14
CDY17946 Canola mitochondrion 56.8 59.12
AT3G59220.1 Thale cress cytosol 51.06 58.88
CDX83501 Canola mitochondrion 56.8 58.75
KRH46283 Soybean mitochondrion 52.87 58.72
CDY42802 Canola mitochondrion 56.5 58.26
CDX67787 Canola nucleus 46.83 57.2
KRG98621 Soybean nucleus 38.97 56.83
AT3G59260.1 Thale cress cytosol 46.53 56.83
AT1G50590.1 Thale cress cytosol, mitochondrion, nucleus, plastid 52.57 56.13
CDX98356 Canola cytosol 44.71 56.06
CDY22806 Canola cytosol 52.57 55.95
CDY37125 Canola cytosol 52.27 55.63
Bra018859.1-P Field mustard cytosol 52.27 55.63
Solyc12g014590.1.1 Tomato mitochondrion 53.47 54.13
CDY06015 Canola cytosol 45.92 53.52
CDY06016 Canola cytosol 42.9 53.18
HORVU5Hr1G120800.4 Barley plastid 71.3 53.15
CDX89016 Canola nucleus 46.53 53.1
Bra007437.1-P Field mustard cytosol 31.42 53.06
CDY57498 Canola cytosol 44.41 52.88
Bra014547.1-P Field mustard nucleus 46.22 52.76
Zm00001d046171_P001 Maize endoplasmic reticulum, mitochondrion, nucleus, plastid 32.02 52.74
CDY00611 Canola nucleus 45.32 51.9
CDY57499 Canola cytoskeleton, cytosol, nucleus 48.34 51.78
Bra003367.1-P Field mustard cytosol 29.61 51.31
AT2G43120.2 Thale cress nucleus 57.1 50.81
Bra007438.1-P Field mustard cytosol 27.19 48.65
Solyc07g065160.2.1 Tomato mitochondrion 41.39 45.97
PGSC0003DMT400057126 Potato cytosol, mitochondrion, nucleus, plastid 41.39 45.97
HORVU5Hr1G120810.1 Barley plastid 34.44 45.78
Zm00001d032363_P001 Maize cytosol 46.53 41.07
VIT_09s0096g00380.t01 Wine grape nucleus 12.99 30.71
Protein Annotations
EMBL:BT062570EnsemblPlants:Zm00001d008595_P001EnsemblPlants:Zm00001d008595_T001EnsemblPlantsGene:Zm00001d008595EntrezGene:100284285Gene3D:2.60.120.10
InterPro:IPR014710InterPro:PirinInterPro:Pirin_C_domInterPro:Pirin_N_domInterPro:RmlC-like_jellyrollInterPro:RmlC_Cupin_sf
PANTHER:PTHR13903PANTHER:PTHR13903:SF5PFAM:PF02678PFAM:PF05726PIRSF:PIRSF006232ProteinID:AQK90224.1
SUPFAM:SSF51182UniParc:UPI0001948D62UniProt:C0P2Q1MapMan:35.1::
Description
Pirin-like protein 2
Coordinates
chr8:+:13962715..13964723
Molecular Weight (calculated)
36419.2 Da
IEP (calculated)
8.499
GRAVY (calculated)
-0.427
Length
331 amino acids
Sequence
(BLAST)
001: MMRLKQHMGL VSSPTPAIVV RLGNNTPHRR RATRSRIVSS SASDAAPFEK PRAVVKKVLA QSQPEGQGAT VRRSIGRHEL RNLDPFLQLD EFTVSKPAGF
101: PDHPHRGFET VTHMFEGAIT HQDFAGHKGT IRTGDVQWMT AGRGIVHSEM PAGDGVSEGL QLWINLSSKD KMIEPRYQEL ERKDISRAET EDGVEARVIA
201: GEAFGVASPV YTRTPIMYVD FTMRPGSRLH QPVPEGWNAF VYVVDGEGVF GRETATAHHC LVLGSGDGVS VWNRSARPLR FVLAAGQPLG EPVVQHGPFV
301: MNSHAEIQQA MEDYSYGKNG FERAGQWSSS A
Best Arabidopsis Sequence Match ( AT2G43120.2 )
(BLAST)
001: MAHNQFKDSL DPLSSINRHT ESQHQNTSKI RLLPRKATKK KKREEKTTLK YMRAAINRAN SLGGLFSFRF IRNIKSMSSS TSQDFVSRPV IKKVFAKLQK
101: EGDGAVVRRG ISRSEQKLLD PFLMLDEFSV SPPAGFPDHP HRGFETVTYV LEGGITHQDF KGHKGTIYAG DVQWMTAGRG IIHSEMPEEE VNKGLQLWIN
201: LSSNEKMIEP NYQELSHSDI PKAEQNGVEV KVIAGESMGI QSPVYTRTPT MFLDFTLQPG AQIHQNVPES WNAFAYILES GEGGGVFSSS NSSPIPAHSV
301: VVFGPGNDGV SVWNKSSSKQ LRFVLIAGEP IGEPVVQYGP FVMNTQAEID MTIEDYHYGK NGFEMAKYWR SQ
Arabidopsis Description
RmlC-like cupins superfamily protein [Source:TAIR;Acc:AT2G43120]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.