Factsheet for VIT_19s0090g01530.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14295	Soybean	cytosol	81.21	80.4
HORVU5Hr1G092220.3	Barley	mitochondrion, peroxisome	34.9	80.0
KRH73851	Soybean	cytoskeleton, cytosol, nucleus	80.54	79.73
PGSC0003DMT400033425	Potato	mitochondrion	77.52	78.84
KRH46283	Soybean	mitochondrion	76.85	76.85
GSMUA_Achr3P11020_001	Banana	cytosol	76.17	75.42
KRG98621	Soybean	nucleus	56.38	74.01
Os09t0484800-01	Rice	cytosol, mitochondrion	71.48	71.72
VIT_05s0062g01190.t01	Wine grape	cytosol, nucleus, peroxisome	70.47	71.43
EER96962	Sorghum	cytosol	69.8	70.75
TraesCS5D01G270300.1	Wheat	cytosol	71.14	69.97
Zm00001d020915_P002	Maize	cytosol	69.46	69.93
TraesCS5B01G261100.1	Wheat	mitochondrion	71.48	69.84
HORVU5Hr1G072760.2	Barley	mitochondrion	70.81	69.64
Solyc12g014590.1.1	Tomato	mitochondrion	75.17	68.5
GSMUA_Achr3P02460_001	Banana	cytosol	67.79	68.47
GSMUA_Achr9P01680_001	Banana	cytosol	68.12	68.35
TraesCS5A01G262700.1	Wheat	mitochondrion	71.48	67.83
GSMUA_Achr10P...	Banana	cytosol	67.11	67.11
TraesCS5B01G535900.1	Wheat	plastid	66.11	67.01
VIT_05s0094g00610.t01	Wine grape	cytosol	24.16	66.67
TraesCS5D01G533400.1	Wheat	cytosol	65.44	66.33
TraesCS4A01G336100.1	Wheat	nucleus	65.44	66.33
AT1G50590.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	67.79	65.16
TraesCS5D01G533200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	63.42	64.95
Bra018859.1-P	Field mustard	cytosol	67.45	64.63
CDY22806	Canola	cytosol	67.45	64.63
TraesCS5D01G533500.1	Wheat	plastid	65.1	64.45
CDY37125	Canola	cytosol	67.11	64.31
VIT_09s0096g00130.t01	Wine grape	cytosol, nucleus, plastid	20.81	62.0
HORVU5Hr1G120790.2	Barley	cytosol	64.77	58.66
TraesCS4A01G335900.1	Wheat	plastid	57.72	58.5
PGSC0003DMT400057126	Potato	cytosol, mitochondrion, nucleus, plastid	57.72	57.72
Zm00001d008595_P001	Maize	plastid	64.09	57.7
Solyc07g065160.2.1	Tomato	mitochondrion	57.38	57.38
Zm00001d009514_P001	Maize	cytosol, endoplasmic reticulum	18.79	56.57
Os03t0845000-01	Rice	plasma membrane	68.12	56.23
OQU90634	Sorghum	mitochondrion	67.11	56.02
TraesCS4A01G336000.2	Wheat	nucleus	59.06	53.17
TraesCS5B01G536000.2	Wheat	plastid	65.44	52.7
TraesCS4A01G336200.2	Wheat	plastid	64.77	52.16
TraesCS5B01G535800.1	Wheat	plastid	64.43	51.61
TraesCS5B01G535700.3	Wheat	plastid	63.42	51.22
TraesCS5D01G533100.1	Wheat	plastid	64.77	51.19
Zm00001d034829_P001	Maize	mitochondrion	64.43	50.66
HORVU5Hr1G120780.3	Barley	plastid	64.43	50.0
HORVU5Hr1G120800.4	Barley	plastid	66.11	44.37
Zm00001d046171_P001	Maize	endoplasmic reticulum, mitochondrion, nucleus, plastid	29.87	44.28
Os08t0364900-00	Rice	plastid	51.68	43.75
TraesCS1B01G420000.1	Wheat	plastid	52.68	43.61
TraesCS1D01G400000.1	Wheat	plastid	51.68	42.78
TraesCS1A01G391900.1	Wheat	plastid	51.34	42.27
HORVU5Hr1G120810.1	Barley	plastid	34.23	40.96
Zm00001d032363_P001	Maize	cytosol	48.66	38.67
HORVU1Hr1G086450.3	Barley	endoplasmic reticulum, plastid	51.01	38.19
EES14882	Sorghum	cytosol, plastid	48.32	38.1
VIT_09s0096g00380.t01	Wine grape	nucleus	14.09	30.0

Protein Annotations

EntrezGene:100241784	wikigene:100241784	Gene3D:2.60.120.10	MapMan:35.1	ProteinID:CBI26720	ProteinID:CBI26720.3
UniProt:D7T861	EMBL:FN595751	InterPro:IPR014710	EntrezGene:LOC100241784	wikigene:LOC100241784	PFAM:PF02678
PFAM:PF05726	PIRSF:PIRSF006232	PANTHER:PTHR13903	PANTHER:PTHR13903:SF5	InterPro:Pirin	InterPro:Pirin_C_dom
InterPro:Pirin_N_dom	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	SUPFAM:SSF51182	TIGR:TC58548	UniParc:UPI00015C755F
ArrayExpress:VIT_19s0090g01530	EnsemblPlantsGene:VIT_19s0090g01530	EnsemblPlants:VIT_19s0090g01530.t01	unigene:Vvi.19144	unigene:Vvi.21280	RefSeq:XP_002275409
RefSeq:XP_002275409.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr19:+:7622514..7624400

Molecular Weight (calculated)

33268.9 Da

IEP (calculated)

6.522

GRAVY (calculated)

-0.307

Length

298 amino acids

Sequence
(BLAST)

001: MPETQISNGF SEPRLVVRKF LARPQHEGAG AIVRRSIGRF ELKYFDPFLV LDEFSVSAPA GFPDHPHRGF ETVTYMLQGA VQHEDFEGHK GSIEAGDLQW
101: MTAGRGIVHS EMPAATGVQK GLQLWINLSS KNKMIEPRYQ EIESKNIAEA TKDGIKVRVI AGEALGKKSP VYTKTPTMYL DFTLSPGAQL QQPIPIKWNA
201: FVYVLEGEGV FGNPKNLPTT AHHLLLLGSG DGLEAWNKSL KPLRFVLVGG EPLGEPVVQL GPFVMNTQEE IDRTIEDYEN CINGFEKAKY WRSEVLRF

Best Arabidopsis Sequence Match ( AT1G50590.1 )
(BLAST)

001: MPISEKSSAT NTRLVVKKLF ARQLHEGFGA VVRRSIGRFE FRYFDPFLVL DEFSVSAPAG FPDHPHRGFE TVTYMLEGEI LHEDCEGHKG VIREGGLQWM
101: TAGKGIVHSE MPSSNSNGIT HNKGLQLWIN LSSRQKLVEP SYQEIESKDI AETEKDGVRV RVIAGEWNGV KSKICTRTPT MYLDFTLSPG SRISQPIPLH
201: WNAFVYVLQG HGHFGDSKLQ HSAAAAHHLL VLGLGGDMLE AWNGSDSGLP LRFILVAGEP IGEPMVQFGP FVMNTQEEID ETIDDFENFR NGFEKARHWK
301: SQAASALGLF

Arabidopsis Description

Pirin-like protein At1g50590 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPS9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.