Factsheet for TraesCS5D01G533500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G457000.1
TraesCS3D01G450000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59220.1	TraesCS3A01G457000.1	AT1G09030.1	17322342
AT3G59220.1	TraesCS3D01G450000.1	AT1G09030.1	17322342

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G533400.1	Wheat	cytosol	90.37	92.52
TraesCS5D01G533200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	86.71	89.69
TraesCS5B01G536000.2	Wheat	plastid	98.01	79.73
TraesCS4A01G336200.2	Wheat	plastid	98.01	79.73
TraesCS5D01G533100.1	Wheat	plastid	91.69	73.21
VIT_05s0094g00610.t01	Wine grape	cytosol	26.25	73.15
PGSC0003DMT400031088	Potato	cytosol	70.43	71.62
VIT_05s0062g01190.t01	Wine grape	cytosol, nucleus, peroxisome	69.44	71.09
GSMUA_Achr9P01680_001	Banana	cytosol	70.1	71.04
GSMUA_Achr3P02460_001	Banana	cytosol	69.1	70.51
Solyc09g098160.2.1	Tomato	mitochondrion	68.11	70.45
Zm00001d008595_P001	Maize	plastid	77.41	70.39
Os03t0845000-01	Rice	plasma membrane	84.39	70.36
GSMUA_Achr10P...	Banana	cytosol	69.44	70.13
PGSC0003DMT400031070	Potato	mitochondrion	65.78	68.75
OQU90634	Sorghum	mitochondrion	79.4	66.95
VIT_19s0090g01530.t01	Wine grape	cytosol	64.45	65.1
HORVU5Hr1G120800.4	Barley	plastid	96.01	65.09
Solyc09g098180.2.1	Tomato	plastid	71.1	64.85
VIT_09s0096g00130.t01	Wine grape	cytosol, nucleus, plastid	20.93	63.0
KRH01821	Soybean	plastid	67.11	62.35
KRH46866	Soybean	plastid	67.11	62.15
PGSC0003DMT400033425	Potato	mitochondrion	60.47	62.12
Zm00001d034829_P001	Maize	mitochondrion	77.74	61.74
KRH46283	Soybean	mitochondrion	60.8	61.41
KRH14295	Soybean	cytosol	61.13	61.13
CDY55513	Canola	plastid	59.8	60.81
Bra004746.1-P	Field mustard	plastid	59.8	60.81
KRH73851	Soybean	cytoskeleton, cytosol, nucleus	60.8	60.8
Zm00001d009514_P001	Maize	cytosol, endoplasmic reticulum	19.93	60.61
Bra000289.1-P	Field mustard	cytosol	59.14	60.34
TraesCS5D01G270300.1	Wheat	cytosol	60.13	59.74
KRG98621	Soybean	nucleus	44.85	59.47
AT3G59220.1	Thale cress	cytosol	55.81	58.54
CDY17721	Canola	mitochondrion	37.87	58.16
CDY17946	Canola	mitochondrion	61.13	57.86
CDX83501	Canola	mitochondrion	60.47	56.88
CDY42802	Canola	mitochondrion	59.8	56.07
CDY22806	Canola	cytosol	57.81	55.95
CDY37125	Canola	cytosol	57.48	55.63
AT1G50590.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	57.14	55.48
AT3G59260.1	Thale cress	cytosol	49.83	55.35
Bra018859.1-P	Field mustard	cytosol	57.14	55.31
Solyc12g014590.1.1	Tomato	mitochondrion	59.47	54.74
CDX67787	Canola	nucleus	49.17	54.61
CDX89016	Canola	nucleus	51.83	53.79
CDX98356	Canola	cytosol	47.18	53.79
CDY06016	Canola	cytosol	46.84	52.81
Bra014547.1-P	Field mustard	nucleus	50.5	52.41
CDY00611	Canola	nucleus	49.83	51.9
CDY06015	Canola	cytosol	48.84	51.76
CDY57499	Canola	cytoskeleton, cytosol, nucleus	52.82	51.46
CDY57498	Canola	cytosol	47.51	51.44
Bra007437.1-P	Field mustard	cytosol	33.22	51.02
Zm00001d046171_P001	Maize	endoplasmic reticulum, mitochondrion, nucleus, plastid	32.89	49.25
AT2G43120.2	Thale cress	nucleus	60.13	48.66
Solyc07g065160.2.1	Tomato	mitochondrion	47.84	48.32
Bra003367.1-P	Field mustard	cytosol	30.56	48.17
PGSC0003DMT400057126	Potato	cytosol, mitochondrion, nucleus, plastid	47.18	47.65
Bra007438.1-P	Field mustard	cytosol	28.24	45.95
TraesCS1D01G400000.1	Wheat	plastid	54.49	45.56
VIT_09s0096g00380.t01	Wine grape	nucleus	12.62	27.14

Protein Annotations

EnsemblPlants:TraesCS5D01G533500.1	EnsemblPlantsGene:TraesCS5D01G533500	Gene3D:2.60.120.10	InterPro:IPR014710	InterPro:Pirin	InterPro:Pirin_C_dom
InterPro:Pirin_N_dom	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	PANTHER:PTHR13903	PANTHER:PTHR13903:SF5	PFAM:PF02678
PFAM:PF05726	PIRSF:PIRSF006232	SEG:seg	SUPFAM:SSF51182	MapMan:35.1	:

Description

No Description!

Coordinates

chr5D:-:547925029..547926357

Molecular Weight (calculated)

32622.5 Da

IEP (calculated)

6.423

GRAVY (calculated)

-0.308

Length

301 amino acids

Sequence
(BLAST)

001: MSSSSSSSSA AAASVPFQSP RKVVKKVLSL SQSEGQGATV RRSIGGHEVR NLDPFLLLDE FSVSKPAGFP DHPHRGFETV TYMLDGVFTH QDFSGHTGTI
101: RTGDVQWMTA GRGIVHSEMP AADGVQKGLQ LWINLASKDK MIEPRYQELE SKDISQAEKD GVAVRIIAGE AFGVRSPVYT QTPTMYMDFT MQPGSQLHQP
201: IPEGWNAFVY IIEGEGVFGK EGAAPASAHH CLVLGAGDGL SVWNRSGAPL RFALAAGQPL NEPVVQQGPF VMNSRAQIQQ AMEDYYYGRN GFEKASQWSS
301: A

Best Arabidopsis Sequence Match ( AT3G59220.1 )
(BLAST)

001: MTYENNSVPR IVIKKVLAKL EKEGEGAVVR NGITKIDQKL LDPFVLLVEF SFSLSAGFPD HPHRGFESVT YMLQGGIIHK DPKGHKGTIQ AGDVQWMTAG
101: RGIIHSEFPE EEVNNGLQLW INLPSTEKMT EPKYKELSSL DIPRAEENGV EVKVIAGDSM GIKSPVYTRT PTMFLDFTLK PGSQTHQTVP ESWTAFAYII
201: EGDEGVFGSL NSSAISAHHV VVFGPGDLVS VWNKSTSRSL RFLLIAGEPI GEPVVQCGPF VMNSQAEIDM AFDDYQNAKN GFEMAKC

Arabidopsis Description

PRN1Pirin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX49]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.