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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX95014

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G59220.1 CDX95014 AT1G09030.1 17322342
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra014547.1-P Field mustard nucleus 97.24 97.24
CDY00611 Canola nucleus 90.69 91.0
CDY06016 Canola cytosol 76.9 83.52
AT3G59220.1 Thale cress cytosol 81.38 82.23
CDY57499 Canola cytoskeleton, cytosol, nucleus 83.1 77.99
CDX67787 Canola nucleus 64.14 68.63
CDX98356 Canola cytosol 60.34 66.29
CDY55513 Canola plastid 64.83 63.51
CDY17946 Canola mitochondrion 66.21 60.38
CDY42802 Canola mitochondrion 66.55 60.12
CDX83501 Canola mitochondrion 65.86 59.69
CDY06015 Canola cytosol 58.28 59.51
CDY57498 Canola cytosol 55.86 58.27
VIT_05s0062g01190.t01 Wine grape cytosol, nucleus, peroxisome 58.28 57.48
PGSC0003DMT400031088 Potato cytosol 57.24 56.08
VIT_05s0094g00610.t01 Wine grape cytosol 20.69 55.56
HORVU5Hr1G092220.3 Barley mitochondrion, peroxisome 24.48 54.62
CDY17721 Canola mitochondrion 36.9 54.59
PGSC0003DMT400031070 Potato mitochondrion 54.14 54.51
Solyc09g098160.2.1 Tomato mitochondrion 54.48 54.3
GSMUA_Achr10P... Banana cytosol 55.17 53.69
GSMUA_Achr3P02460_001 Banana cytosol 54.48 53.56
GSMUA_Achr9P01680_001 Banana cytosol 54.14 52.86
TraesCS5B01G535900.1 Wheat plastid 53.1 52.38
TraesCS4A01G336100.1 Wheat nucleus 52.76 52.04
TraesCS5D01G533400.1 Wheat cytosol 52.76 52.04
TraesCS5D01G533500.1 Wheat plastid 53.79 51.83
TraesCS5D01G533200.1 Wheat cytosol, mitochondrion, nucleus, plastid 51.72 51.55
EER96962 Sorghum cytosol 52.07 51.36
Os09t0484800-01 Rice cytosol, mitochondrion 52.07 50.84
KRH01821 Soybean plastid 56.55 50.62
Solyc09g098180.2.1 Tomato plastid 56.9 50.0
KRH46866 Soybean plastid 55.86 49.85
Zm00001d020915_P002 Maize cytosol 50.69 49.66
HORVU5Hr1G072760.2 Barley mitochondrion 51.03 48.84
GSMUA_Achr3P11020_001 Banana cytosol 50.69 48.84
TraesCS5B01G261100.1 Wheat mitochondrion 51.03 48.52
TraesCS5D01G270300.1 Wheat cytosol 50.34 48.18
TraesCS5A01G262700.1 Wheat mitochondrion 51.03 47.13
Zm00001d008595_P001 Maize plastid 53.1 46.53
HORVU5Hr1G120790.2 Barley cytosol 52.76 46.5
TraesCS4A01G335900.1 Wheat plastid 46.9 46.26
CDY22806 Canola cytosol 48.97 45.66
CDY37125 Canola cytosol 48.97 45.66
OQU90634 Sorghum mitochondrion 54.14 43.98
Os03t0845000-01 Rice plasma membrane 52.76 42.38
TraesCS5B01G536000.2 Wheat plastid 53.79 42.16
VIT_09s0096g00130.t01 Wine grape cytosol, nucleus, plastid 14.48 42.0
TraesCS4A01G336000.2 Wheat nucleus 47.59 41.69
TraesCS4A01G336200.2 Wheat plastid 53.1 41.62
Zm00001d009514_P001 Maize cytosol, endoplasmic reticulum 14.14 41.41
TraesCS5B01G535700.3 Wheat plastid 52.41 41.19
Zm00001d034829_P001 Maize mitochondrion 53.1 40.63
TraesCS5B01G535800.1 Wheat plastid 51.72 40.32
TraesCS5D01G533100.1 Wheat plastid 52.07 40.05
HORVU5Hr1G120780.3 Barley plastid 52.07 39.32
TraesCS1B01G420000.1 Wheat plastid 45.86 36.94
Os08t0364900-00 Rice plastid 44.83 36.93
TraesCS1D01G400000.1 Wheat plastid 44.48 35.83
TraesCS1A01G391900.1 Wheat plastid 44.48 35.64
HORVU5Hr1G120800.4 Barley plastid 53.45 34.91
Zm00001d046171_P001 Maize endoplasmic reticulum, mitochondrion, nucleus, plastid 24.14 34.83
HORVU1Hr1G086450.3 Barley endoplasmic reticulum, plastid 43.79 31.91
HORVU5Hr1G120810.1 Barley plastid 26.21 30.52
EES14882 Sorghum cytosol, plastid 39.66 30.42
Zm00001d032363_P001 Maize cytosol 39.31 30.4
VIT_09s0096g00380.t01 Wine grape nucleus 8.62 17.86
Protein Annotations
EnsemblPlants:CDX89016EnsemblPlantsGene:GSBRNA2T00149130001Gene3D:2.60.120.10InterPro:IPR014710InterPro:PirinInterPro:Pirin_C_dom
InterPro:Pirin_N_domInterPro:RmlC-like_jellyrollInterPro:RmlC_Cupin_sfPANTHER:PTHR13903PANTHER:PTHR13903:SF5PFAM:PF02678
PFAM:PF05726PIRSF:PIRSF006232ProteinID:CDX89016ProteinID:CDX89016.1SUPFAM:SSF51182UniParc:UPI0004EF1916
MapMan:35.1:::::
Description
BnaA04g01700D
Coordinates
chrLK031857:+:540204..541888
Molecular Weight (calculated)
32028.1 Da
IEP (calculated)
4.919
GRAVY (calculated)
-0.247
Length
290 amino acids
Sequence
(BLAST)
001: MSPSSENNRV TRQVIKSFLV KLQEEGEGAL VRNAITEMDQ KLLDPFVLLV DFSFSLSVGY PDHPHRGFES VTYMLKGGII HKDLKGHTST IKAGDVQWMT
101: AGRGIIHSEY PEQEVNNGLQ LWINLPSIHR MMEPKNLELS SSEIQRAEED GVEVNVIAGD SMGIKSPSHT TTPMMYLDFT LKPGSQTHQT VPESWTAFAY
201: ILEGDEGVFS SMNSSAISAH HVVVFGPGEL VSVWNKSSSR SLRFLLIAGE PIGEPMVQSG PFVMSSQAEI DMAFEDYQNA KNGFEMAKSS
Best Arabidopsis Sequence Match ( AT3G59220.1 )
(BLAST)
001: MTYENNSVPR IVIKKVLAKL EKEGEGAVVR NGITKIDQKL LDPFVLLVEF SFSLSAGFPD HPHRGFESVT YMLQGGIIHK DPKGHKGTIQ AGDVQWMTAG
101: RGIIHSEFPE EEVNNGLQLW INLPSTEKMT EPKYKELSSL DIPRAEENGV EVKVIAGDSM GIKSPVYTRT PTMFLDFTLK PGSQTHQTVP ESWTAFAYII
201: EGDEGVFGSL NSSAISAHHV VVFGPGDLVS VWNKSTSRSL RFLLIAGEPI GEPVVQCGPF VMNSQAEIDM AFDDYQNAKN GFEMAKC
Arabidopsis Description
PRN1Pirin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX49]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.