Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d042197_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G59220.1 | Zm00001d042197_P001 | AT1G09030.1 | 17322342 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d008595_P001 | Maize | plastid | 71.77 | 82.18 |
| TraesCS5B01G535900.1 | Wheat | plastid | 62.01 | 79.93 |
| TraesCS4A01G336100.1 | Wheat | nucleus | 61.48 | 79.25 |
| TraesCS5D01G533400.1 | Wheat | cytosol | 60.69 | 78.23 |
| TraesCS5D01G533500.1 | Wheat | plastid | 61.74 | 77.74 |
| TraesCS5D01G533200.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 59.63 | 77.66 |
| OQU90634 | Sorghum | mitochondrion | 72.56 | 77.03 |
| GSMUA_Achr3P02460_001 | Banana | cytosol | 56.2 | 72.2 |
| TraesCS4A01G335900.1 | Wheat | plastid | 55.67 | 71.77 |
| PGSC0003DMT400031088 | Potato | cytosol | 55.94 | 71.62 |
| HORVU5Hr1G120790.2 | Barley | cytosol | 61.74 | 71.12 |
| VIT_05s0094g00610.t01 | Wine grape | cytosol | 20.05 | 70.37 |
| Solyc09g098160.2.1 | Tomato | mitochondrion | 53.83 | 70.1 |
| VIT_05s0062g01190.t01 | Wine grape | cytosol, nucleus, peroxisome | 54.35 | 70.07 |
| PGSC0003DMT400031070 | Potato | mitochondrion | 53.03 | 69.79 |
| GSMUA_Achr10P... | Banana | cytosol | 54.35 | 69.13 |
| GSMUA_Achr9P01680_001 | Banana | cytosol | 54.09 | 69.02 |
| Os03t0845000-01 | Rice | plasma membrane | 65.17 | 68.42 |
| VIT_09s0096g00130.t01 | Wine grape | cytosol, nucleus, plastid | 17.68 | 67.0 |
| TraesCS5B01G536000.2 | Wheat | plastid | 64.38 | 65.95 |
| TraesCS4A01G336200.2 | Wheat | plastid | 64.38 | 65.95 |
| TraesCS5B01G535800.1 | Wheat | plastid | 64.64 | 65.86 |
| TraesCS5B01G535700.3 | Wheat | plastid | 64.12 | 65.85 |
| Solyc09g098180.2.1 | Tomato | plastid | 56.73 | 65.15 |
| TraesCS5D01G533100.1 | Wheat | plastid | 64.38 | 64.72 |
| VIT_19s0090g01530.t01 | Wine grape | cytosol | 50.66 | 64.43 |
| Zm00001d020915_P002 | Maize | cytosol | 50.13 | 64.19 |
| PGSC0003DMT400033425 | Potato | mitochondrion | 48.55 | 62.8 |
| HORVU5Hr1G120780.3 | Barley | plastid | 63.59 | 62.76 |
| Zm00001d009514_P001 | Maize | cytosol, endoplasmic reticulum | 16.36 | 62.63 |
| KRH01821 | Soybean | plastid | 53.3 | 62.35 |
| TraesCS4A01G336000.2 | Wheat | nucleus | 54.35 | 62.24 |
| Bra004746.1-P | Field mustard | plastid | 48.55 | 62.16 |
| Bra000289.1-P | Field mustard | cytosol | 48.28 | 62.03 |
| KRH46866 | Soybean | plastid | 52.77 | 61.54 |
| CDY55513 | Canola | plastid | 48.02 | 61.49 |
| KRH14295 | Soybean | cytosol | 48.28 | 60.8 |
| CDY17721 | Canola | mitochondrion | 31.13 | 60.2 |
| KRH73851 | Soybean | cytoskeleton, cytosol, nucleus | 47.76 | 60.13 |
| KRH46283 | Soybean | mitochondrion | 46.7 | 59.4 |
| AT3G59220.1 | Thale cress | cytosol | 44.85 | 59.23 |
| CDY17946 | Canola | mitochondrion | 49.34 | 58.8 |
| CDX83501 | Canola | mitochondrion | 49.6 | 58.75 |
| CDY42802 | Canola | mitochondrion | 49.34 | 58.26 |
| KRG98621 | Soybean | nucleus | 33.77 | 56.39 |
| HORVU5Hr1G120800.4 | Barley | plastid | 65.96 | 56.31 |
| AT1G50590.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 45.65 | 55.81 |
| CDX67787 | Canola | nucleus | 39.84 | 55.72 |
| Solyc12g014590.1.1 | Tomato | mitochondrion | 48.02 | 55.66 |
| AT3G59260.1 | Thale cress | cytosol | 39.58 | 55.35 |
| CDY22806 | Canola | cytosol | 45.38 | 55.31 |
| Bra018859.1-P | Field mustard | cytosol | 45.12 | 54.98 |
| CDY37125 | Canola | cytosol | 45.12 | 54.98 |
| CDX98356 | Canola | cytosol | 37.99 | 54.55 |
| Zm00001d046171_P001 | Maize | endoplasmic reticulum, mitochondrion, nucleus, plastid | 28.5 | 53.73 |
| CDY06016 | Canola | cytosol | 37.47 | 53.18 |
| CDY06015 | Canola | cytosol | 39.84 | 53.17 |
| CDX89016 | Canola | nucleus | 40.63 | 53.1 |
| CDY57498 | Canola | cytosol | 38.52 | 52.52 |
| Bra014547.1-P | Field mustard | nucleus | 40.11 | 52.41 |
| CDY57499 | Canola | cytoskeleton, cytosol, nucleus | 42.48 | 52.1 |
| Bra007437.1-P | Field mustard | cytosol | 26.91 | 52.04 |
| CDY00611 | Canola | nucleus | 39.58 | 51.9 |
| AT2G43120.2 | Thale cress | nucleus | 50.4 | 51.34 |
| Bra003367.1-P | Field mustard | cytosol | 24.8 | 49.21 |
| Bra007438.1-P | Field mustard | cytosol | 23.48 | 48.11 |
| Solyc07g065160.2.1 | Tomato | mitochondrion | 36.68 | 46.64 |
| PGSC0003DMT400057126 | Potato | cytosol, mitochondrion, nucleus, plastid | 36.68 | 46.64 |
| HORVU5Hr1G120810.1 | Barley | plastid | 29.82 | 45.38 |
| Zm00001d032363_P001 | Maize | cytosol | 41.69 | 42.13 |
| VIT_09s0096g00380.t01 | Wine grape | nucleus | 11.08 | 30.0 |
Protein Annotations
| EntrezGene:100193073 | Gene3D:2.60.120.10 | MapMan:35.1 | UniProt:A0A1D6LBR8 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:IPR014710 | ProteinID:ONM11543.1 | PFAM:PF02678 | PFAM:PF05726 | PIRSF:PIRSF006232 |
| PANTHER:PTHR13903 | PANTHER:PTHR13903:SF5 | InterPro:Pirin | InterPro:Pirin_C_dom | InterPro:Pirin_N_dom | InterPro:RmlC-like_jellyroll |
| InterPro:RmlC_Cupin_sf | SUPFAM:SSF51182 | TMHMM:TMhelix | UniParc:UPI000221674E | EnsemblPlantsGene:Zm00001d034829 | EnsemblPlants:Zm00001d034829_P001 |
| EnsemblPlants:Zm00001d034829_T001 | SEG:seg | : | : | : | : |
Description
Pirin-like protein 2
Coordinates
chr1:-:303243570..303245421
Molecular Weight (calculated)
41857.3 Da
IEP (calculated)
9.558
GRAVY (calculated)
-0.231
Length
379 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTTMMRLRQ HLGLVSSPSI YTSAIARFGN NTPHRRRTST STTTHITQKQ FLLLVILLLL LLLLLFSVVF LIPTVSLPPA RSRTMSSSAS DAAPFEKPRA
101: VVKKVLAESQ PEGQGATVRR SIGRHELRNL DPFLLLDEFT VYKPAGFPDH PHRGFETVTY MLEGAFTHQD FAGHKGTIKT GDVQWMTAGR GIVHSEMPAG
201: DGVHKGLQLW INLSSKDKMI EPRYQELESK DISRGESEDG GVEARVIAGE ALGAASPVYT RTPTMYVDFT MRPGSRLHQP VPEGWNAFVY VVDGEGVFGR
301: ETATAHYCLV LGPGDGVSVW NRSTRPLRFV LVAGQPLGEP VVQHGPFVMN SRAQIQKAME DYYYGKNGFE RAGQWSSSA
101: VVKKVLAESQ PEGQGATVRR SIGRHELRNL DPFLLLDEFT VYKPAGFPDH PHRGFETVTY MLEGAFTHQD FAGHKGTIKT GDVQWMTAGR GIVHSEMPAG
201: DGVHKGLQLW INLSSKDKMI EPRYQELESK DISRGESEDG GVEARVIAGE ALGAASPVYT RTPTMYVDFT MRPGSRLHQP VPEGWNAFVY VVDGEGVFGR
301: ETATAHYCLV LGPGDGVSVW NRSTRPLRFV LVAGQPLGEP VVQHGPFVMN SRAQIQKAME DYYYGKNGFE RAGQWSSSA
001: MAHNQFKDSL DPLSSINRHT ESQHQNTSKI RLLPRKATKK KKREEKTTLK YMRAAINRAN SLGGLFSFRF IRNIKSMSSS TSQDFVSRPV IKKVFAKLQK
101: EGDGAVVRRG ISRSEQKLLD PFLMLDEFSV SPPAGFPDHP HRGFETVTYV LEGGITHQDF KGHKGTIYAG DVQWMTAGRG IIHSEMPEEE VNKGLQLWIN
201: LSSNEKMIEP NYQELSHSDI PKAEQNGVEV KVIAGESMGI QSPVYTRTPT MFLDFTLQPG AQIHQNVPES WNAFAYILES GEGGGVFSSS NSSPIPAHSV
301: VVFGPGNDGV SVWNKSSSKQ LRFVLIAGEP IGEPVVQYGP FVMNTQAEID MTIEDYHYGK NGFEMAKYWR SQ
101: EGDGAVVRRG ISRSEQKLLD PFLMLDEFSV SPPAGFPDHP HRGFETVTYV LEGGITHQDF KGHKGTIYAG DVQWMTAGRG IIHSEMPEEE VNKGLQLWIN
201: LSSNEKMIEP NYQELSHSDI PKAEQNGVEV KVIAGESMGI QSPVYTRTPT MFLDFTLQPG AQIHQNVPES WNAFAYILES GEGGGVFSSS NSSPIPAHSV
301: VVFGPGNDGV SVWNKSSSKQ LRFVLIAGEP IGEPVVQYGP FVMNTQAEID MTIEDYHYGK NGFEMAKYWR SQ
Arabidopsis Description
RmlC-like cupins superfamily protein [Source:TAIR;Acc:AT2G43120]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.