Factsheet for GSMUA_Achr9P01680_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr8P21910_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59220.1	GSMUA_Achr8P21910_001	AT1G09030.1	17322342

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	84.18	83.89
GSMUA_Achr3P02460_001	Banana	cytosol	80.81	81.36
VIT_05s0062g01190.t01	Wine grape	cytosol, nucleus, peroxisome	76.43	77.21
PGSC0003DMT400031088	Potato	cytosol	73.06	73.31
TraesCS4A01G336100.1	Wheat	nucleus	72.05	72.79
VIT_05s0094g00610.t01	Wine grape	cytosol	26.26	72.22
Solyc09g098160.2.1	Tomato	mitochondrion	70.71	72.16
TraesCS5B01G535900.1	Wheat	plastid	71.38	72.11
PGSC0003DMT400031070	Potato	mitochondrion	69.7	71.88
TraesCS5D01G533200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	70.03	71.48
TraesCS5D01G533400.1	Wheat	cytosol	70.37	71.09
TraesCS5D01G533500.1	Wheat	plastid	71.04	70.1
VIT_19s0090g01530.t01	Wine grape	cytosol	68.35	68.12
VIT_09s0096g00130.t01	Wine grape	cytosol, nucleus, plastid	22.9	68.0
GSMUA_Achr3P11020_001	Banana	cytosol	67.68	66.78
KRH01821	Soybean	plastid	72.39	66.36
Solyc09g098180.2.1	Tomato	plastid	73.4	66.06
PGSC0003DMT400033425	Potato	mitochondrion	64.65	65.53
Bra004746.1-P	Field mustard	plastid	64.98	65.2
CDY55513	Canola	plastid	64.98	65.2
Bra000289.1-P	Field mustard	cytosol	64.65	65.08
KRH46866	Soybean	plastid	71.04	64.92
KRH14295	Soybean	cytosol	64.65	63.79
TraesCS4A01G335900.1	Wheat	plastid	62.96	63.61
KRH73851	Soybean	cytoskeleton, cytosol, nucleus	63.97	63.12
HORVU5Hr1G120790.2	Barley	cytosol	69.7	62.92
Zm00001d008595_P001	Maize	plastid	69.36	62.24
KRH46283	Soybean	mitochondrion	61.95	61.74
CDX83501	Canola	mitochondrion	65.66	60.94
CDY17721	Canola	mitochondrion	40.07	60.71
Os03t0845000-01	Rice	plasma membrane	73.4	60.39
CDY17946	Canola	mitochondrion	64.65	60.38
CDY42802	Canola	mitochondrion	64.98	60.12
Solyc12g014590.1.1	Tomato	mitochondrion	65.99	59.94
AT3G59220.1	Thale cress	cytosol	57.58	59.58
CDY22806	Canola	cytosol	61.95	59.16
CDY37125	Canola	cytosol	61.62	58.84
Bra018859.1-P	Field mustard	cytosol	61.62	58.84
OQU90634	Sorghum	mitochondrion	70.71	58.82
AT1G50590.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	60.61	58.06
KRG98621	Soybean	nucleus	44.11	57.71
TraesCS4A01G336000.2	Wheat	nucleus	64.31	57.7
Zm00001d009514_P001	Maize	cytosol, endoplasmic reticulum	19.19	57.58
TraesCS5B01G536000.2	Wheat	plastid	70.71	56.76
TraesCS5B01G535800.1	Wheat	plastid	70.37	56.18
TraesCS5B01G535700.3	Wheat	plastid	69.7	56.1
TraesCS4A01G336200.2	Wheat	plastid	69.7	55.95
TraesCS5D01G533100.1	Wheat	plastid	69.7	54.91
CDX67787	Canola	nucleus	49.83	54.61
AT3G59260.1	Thale cress	cytosol	49.83	54.61
CDX89016	Canola	nucleus	52.86	54.14
Zm00001d034829_P001	Maize	mitochondrion	69.02	54.09
HORVU5Hr1G120780.3	Barley	plastid	69.7	53.91
CDX98356	Canola	cytosol	47.47	53.41
Bra014547.1-P	Field mustard	nucleus	51.85	53.1
CDY06016	Canola	cytosol	46.8	52.06
AT2G43120.2	Thale cress	nucleus	64.98	51.88
CDY06015	Canola	cytosol	49.16	51.41
CDY00611	Canola	nucleus	49.83	51.21
CDY57499	Canola	cytoskeleton, cytosol, nucleus	53.2	51.13
CDY57498	Canola	cytosol	47.14	50.36
Bra007437.1-P	Field mustard	cytosol	33.0	50.0
Solyc07g065160.2.1	Tomato	mitochondrion	49.49	49.33
PGSC0003DMT400057126	Potato	cytosol, mitochondrion, nucleus, plastid	49.49	49.33
Zm00001d046171_P001	Maize	endoplasmic reticulum, mitochondrion, nucleus, plastid	32.66	48.26
Bra003367.1-P	Field mustard	cytosol	30.98	48.17
HORVU5Hr1G120800.4	Barley	plastid	70.71	47.3
Bra007438.1-P	Field mustard	cytosol	27.61	44.32
HORVU5Hr1G120810.1	Barley	plastid	34.68	41.37
VIT_09s0096g00380.t01	Wine grape	nucleus	14.14	30.0

Protein Annotations

EnsemblPlants:GSMUA_Achr9P01680_001	EnsemblPlants:GSMUA_Achr9T01680_001	EnsemblPlantsGene:GSMUA_Achr9G01680_001	Gene3D:2.60.120.10	InterPro:IPR014710	InterPro:Pirin
InterPro:Pirin_C_dom	InterPro:Pirin_N_dom	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	PANTHER:PTHR13903	PANTHER:PTHR13903:SF5
PFAM:PF02678	PFAM:PF05726	PIRSF:PIRSF006232	SUPFAM:SSF51182	UniParc:UPI000296131B	UniProt:M0TWM5
MapMan:35.1	:	:	:	:	:

Description

Pirin-like protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G01680_001]

Coordinates

chr9:+:1314272..1315875

Molecular Weight (calculated)

33310.5 Da

IEP (calculated)

6.726

GRAVY (calculated)

-0.535

Length

297 amino acids

Sequence
(BLAST)

001: MGDHKNQGFQ NPRHVVKKVL ARPQHEGDGA IVRRSIGRGE LRNLDPFLML DEFSVSAPAG FPDHPHRGFE TVTYMLEGAF THQDFAGHEG TIRAGDLQWM
101: TAGRGIIHSE MPAGEGENKG LQLWINLSSK DKMMEPRYQE LQSKDISRVE KHGVDVRIIA GESFGVRSPV YTQTPTMYLD FTLHPGAEVH QHIPQPWNSF
201: VYIIEGEGVF GDPNASPTTR HHALVLSPGD GLSVWNQAAR PLRFVLIGGQ PLNEPIVQYG PFVMNAQAEI QQAIEDYHYC KNGFEKAKNW KSQPHMN

Best Arabidopsis Sequence Match ( AT2G43120.2 )
(BLAST)

001: MAHNQFKDSL DPLSSINRHT ESQHQNTSKI RLLPRKATKK KKREEKTTLK YMRAAINRAN SLGGLFSFRF IRNIKSMSSS TSQDFVSRPV IKKVFAKLQK
101: EGDGAVVRRG ISRSEQKLLD PFLMLDEFSV SPPAGFPDHP HRGFETVTYV LEGGITHQDF KGHKGTIYAG DVQWMTAGRG IIHSEMPEEE VNKGLQLWIN
201: LSSNEKMIEP NYQELSHSDI PKAEQNGVEV KVIAGESMGI QSPVYTRTPT MFLDFTLQPG AQIHQNVPES WNAFAYILES GEGGGVFSSS NSSPIPAHSV
301: VVFGPGNDGV SVWNKSSSKQ LRFVLIAGEP IGEPVVQYGP FVMNTQAEID MTIEDYHYGK NGFEMAKYWR SQ

Arabidopsis Description

RmlC-like cupins superfamily protein [Source:TAIR;Acc:AT2G43120]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.