Factsheet for TraesCS5B01G535900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
plastid 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G457000.1
TraesCS3D01G450000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59220.1	TraesCS3A01G457000.1	AT1G09030.1	17322342
AT3G59220.1	TraesCS3D01G450000.1	AT1G09030.1	17322342

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G336100.1	Wheat	nucleus	95.92	95.92
TraesCS5D01G533400.1	Wheat	cytosol	95.58	95.58
TraesCS5B01G536000.2	Wheat	plastid	92.86	73.78
VIT_05s0094g00610.t01	Wine grape	cytosol	26.87	73.15
TraesCS5B01G535800.1	Wheat	plastid	92.18	72.85
VIT_05s0062g01190.t01	Wine grape	cytosol, nucleus, peroxisome	72.45	72.45
TraesCS5B01G535700.3	Wheat	plastid	90.82	72.36
PGSC0003DMT400031088	Potato	cytosol	72.45	71.96
GSMUA_Achr3P02460_001	Banana	cytosol	71.77	71.53
Solyc09g098160.2.1	Tomato	mitochondrion	70.75	71.48
GSMUA_Achr9P01680_001	Banana	cytosol	72.11	71.38
Zm00001d008595_P001	Maize	plastid	79.59	70.69
GSMUA_Achr10P...	Banana	cytosol	71.09	70.13
PGSC0003DMT400031070	Potato	mitochondrion	68.37	69.79
Os03t0845000-01	Rice	plasma membrane	84.35	68.7
VIT_09s0096g00130.t01	Wine grape	cytosol, nucleus, plastid	22.79	67.0
OQU90634	Sorghum	mitochondrion	81.29	66.95
VIT_19s0090g01530.t01	Wine grape	cytosol	67.01	66.11
Solyc09g098180.2.1	Tomato	plastid	72.45	64.55
KRH01821	Soybean	plastid	70.07	63.58
Bra004746.1-P	Field mustard	plastid	63.61	63.18
CDY55513	Canola	plastid	63.61	63.18
PGSC0003DMT400033425	Potato	mitochondrion	62.93	63.14
KRH46866	Soybean	plastid	69.73	63.08
KRH14295	Soybean	cytosol	63.61	62.13
Bra000289.1-P	Field mustard	cytosol	62.24	62.03
Zm00001d034829_P001	Maize	mitochondrion	79.93	62.01
KRH73851	Soybean	cytoskeleton, cytosol, nucleus	63.27	61.79
KRH46283	Soybean	mitochondrion	62.59	61.74
CDY17721	Canola	mitochondrion	40.48	60.71
TraesCS5B01G261100.1	Wheat	mitochondrion	62.93	60.66
Zm00001d009514_P001	Maize	cytosol, endoplasmic reticulum	20.41	60.61
KRG98621	Soybean	nucleus	46.26	59.91
CDY17946	Canola	mitochondrion	64.29	59.43
CDX83501	Canola	mitochondrion	63.95	58.75
AT3G59220.1	Thale cress	cytosol	56.8	58.19
CDY42802	Canola	mitochondrion	63.27	57.94
CDY22806	Canola	cytosol	60.54	57.23
CDY37125	Canola	cytosol	60.2	56.91
AT1G50590.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	59.86	56.77
Bra018859.1-P	Field mustard	cytosol	59.86	56.59
Solyc12g014590.1.1	Tomato	mitochondrion	62.24	55.96
CDX67787	Canola	nucleus	50.34	54.61
AT3G59260.1	Thale cress	cytosol	50.34	54.61
CDX98356	Canola	cytosol	48.3	53.79
CDX89016	Canola	nucleus	52.38	53.1
Bra014547.1-P	Field mustard	nucleus	52.04	52.76
CDY06016	Canola	cytosol	47.62	52.43
CDY06015	Canola	cytosol	50.34	52.11
CDY57498	Canola	cytosol	48.98	51.8
HORVU5Hr1G120810.1	Barley	plastid	43.54	51.41
CDY00611	Canola	nucleus	50.34	51.21
Zm00001d046171_P001	Maize	endoplasmic reticulum, mitochondrion, nucleus, plastid	34.69	50.75
Bra007437.1-P	Field mustard	cytosol	33.67	50.51
CDY57499	Canola	cytoskeleton, cytosol, nucleus	52.72	50.16
AT2G43120.2	Thale cress	nucleus	62.93	49.73
Solyc07g065160.2.1	Tomato	mitochondrion	48.98	48.32
Bra003367.1-P	Field mustard	cytosol	31.29	48.17
PGSC0003DMT400057126	Potato	cytosol, mitochondrion, nucleus, plastid	48.64	47.99
Bra007438.1-P	Field mustard	cytosol	29.25	46.49
TraesCS1B01G420000.1	Wheat	plastid	56.8	46.39
VIT_09s0096g00380.t01	Wine grape	nucleus	14.29	30.0

Protein Annotations

EnsemblPlants:TraesCS5B01G535900.1	EnsemblPlantsGene:TraesCS5B01G535900	Gene3D:2.60.120.10	InterPro:IPR014710	InterPro:Pirin	InterPro:Pirin_C_dom
InterPro:Pirin_N_dom	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	PANTHER:PTHR13903	PANTHER:PTHR13903:SF5	PFAM:PF02678
PFAM:PF05726	PIRSF:PIRSF006232	SUPFAM:SSF51182	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr5B:-:691823818..691825439

Molecular Weight (calculated)

32289.1 Da

IEP (calculated)

6.518

GRAVY (calculated)

-0.396

Length

294 amino acids

Sequence
(BLAST)

001: MSSSSSSVTF ENPRKVVKKV LSLSQSEGDG ATVRRSIGRH ELRNLDPFLL LDEFSVSKPA GFPDHPHRGF ETVTYMLDGA FTHQDFSGRK GTIRTGDVQW
101: MTAGSGIVHS EMPAADGVQK GLQLWINLAS KDKMIEPRYQ ELESKDISQA EKDGVAVRII AGEAFGVRSP VYTRTPTMYM DFTMQPGSQL HQPIPEGWNA
201: FVYVIEGEGV FGKENAAPAS THHCLVLGAG DGLSVWNRSG APLRFTLAAG QPLNEPVVQQ GPFVMNSRAQ IQQAMEDYYY GRNGFEKASQ WSSA

Best Arabidopsis Sequence Match ( AT2G43120.2 )
(BLAST)

001: MAHNQFKDSL DPLSSINRHT ESQHQNTSKI RLLPRKATKK KKREEKTTLK YMRAAINRAN SLGGLFSFRF IRNIKSMSSS TSQDFVSRPV IKKVFAKLQK
101: EGDGAVVRRG ISRSEQKLLD PFLMLDEFSV SPPAGFPDHP HRGFETVTYV LEGGITHQDF KGHKGTIYAG DVQWMTAGRG IIHSEMPEEE VNKGLQLWIN
201: LSSNEKMIEP NYQELSHSDI PKAEQNGVEV KVIAGESMGI QSPVYTRTPT MFLDFTLQPG AQIHQNVPES WNAFAYILES GEGGGVFSSS NSSPIPAHSV
301: VVFGPGNDGV SVWNKSSSKQ LRFVLIAGEP IGEPVVQYGP FVMNTQAEID MTIEDYHYGK NGFEMAKYWR SQ

Arabidopsis Description

RmlC-like cupins superfamily protein [Source:TAIR;Acc:AT2G43120]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.