Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G450000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 97.67 | 97.67 |
| HORVU3Hr1G098490.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 94.77 | 94.77 |
| OQU88166 | Sorghum | cytosol, mitochondrion, nucleus | 54.07 | 63.7 |
| Zm00001d042197_P001 | Maize | plastid | 57.56 | 59.64 |
| GSMUA_Achr8P21910_001 | Banana | cytosol | 36.63 | 53.39 |
| Bra018585.1-P | Field mustard | nucleus | 37.79 | 49.24 |
| CDX95014 | Canola | nucleus | 37.79 | 49.24 |
| KRG92877 | Soybean | nucleus | 37.21 | 46.38 |
| PGSC0003DMT400063671 | Potato | nucleus | 37.21 | 46.38 |
| AT1G09030.1 | Thale cress | nucleus | 37.21 | 46.04 |
| KRH33913 | Soybean | nucleus | 37.21 | 45.39 |
| VIT_14s0060g02660.t01 | Wine grape | nucleus | 37.79 | 44.22 |
| Solyc01g099320.2.1 | Tomato | nucleus | 36.05 | 42.47 |
| VIT_01s0010g01940.t01 | Wine grape | cytosol | 37.21 | 42.11 |
| VIT_01s0010g01910.t01 | Wine grape | cytosol | 37.21 | 42.11 |
| TraesCS1A01G411700.1 | Wheat | nucleus | 30.23 | 38.24 |
| TraesCS3A01G457100.1 | Wheat | nucleus | 41.28 | 37.37 |
| TraesCS7A01G486400.1 | Wheat | cytosol | 20.93 | 33.96 |
| TraesCS3A01G352900.1 | Wheat | nucleus | 30.81 | 32.52 |
| TraesCS1A01G288500.3 | Wheat | nucleus | 32.56 | 30.77 |
| TraesCS6A01G287400.2 | Wheat | cytosol, mitochondrion, nucleus, plastid | 29.65 | 29.82 |
| TraesCS3A01G026900.1 | Wheat | nucleus | 33.72 | 28.71 |
| TraesCS2A01G173500.1 | Wheat | nucleus | 36.05 | 27.43 |
| TraesCS2A01G359400.1 | Wheat | nucleus | 38.37 | 26.51 |
| TraesCS7A01G214800.1 | Wheat | cytosol | 29.65 | 24.64 |
| TraesCS6A01G287300.1 | Wheat | nucleus | 33.14 | 23.17 |
| TraesCS7A01G214900.1 | Wheat | nucleus | 29.65 | 19.17 |
| TraesCS7A01G214700.1 | Wheat | nucleus | 30.23 | 18.98 |
| TraesCS7A01G214600.1 | Wheat | nucleus | 29.07 | 18.8 |
| TraesCS7A01G214500.1 | Wheat | nucleus | 29.07 | 16.78 |
| TraesCS3A01G450700.1 | Wheat | cytosol, mitochondrion, nucleus | 16.28 | 9.62 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G457000.1 | EnsemblPlantsGene:TraesCS3A01G457000 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046982 | InterPro:CBFA_NFYB_domain | InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF54 |
| PFAM:PF00808 | PRINTS:PR00615 | SUPFAM:SSF47113 | MapMan:15.5.51.2 | : | : |
Description
No Description!
Coordinates
chr3A:-:694514791..694515309
Molecular Weight (calculated)
18959.3 Da
IEP (calculated)
7.562
GRAVY (calculated)
-0.777
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MTNREDFIHF SGFTQQPGRL RLPRAPSTSG SSSGDPNGQE GLLPIANVGR IMKDVLPPEA KVSKHAKEVI QECATEFIGF VTGEASERCR RERRKTVNGD
101: DICHAMTTLG LDNYAGAMRR YLQRYREGEE LAAALNNHSR SPAPPPPGDG MIQIDVWGEL SNSRGNEKHG RD
101: DICHAMTTLG LDNYAGAMRR YLQRYREGEE LAAALNNHSR SPAPPPPGDG MIQIDVWGEL SNSRGNEKHG RD
001: MAGNYHSFQN PIPRYQNYNF GSSSSNHQHE HDGLVVVVED QQQEESMMVK EQDRLLPIAN VGRIMKNILP ANAKVSKEAK ETMQECVSEF ISFVTGEASD
101: KCHKEKRKTV NGDDICWAMA NLGFDDYAAQ LKKYLHRYRV LEGEKPNHHG KGGPKSSPDN
101: KCHKEKRKTV NGDDICWAMA NLGFDDYAAQ LKKYLHRYRV LEGEKPNHHG KGGPKSSPDN
Arabidopsis Description
NFYB5NF-YB5 [Source:UniProtKB/TrEMBL;Acc:A0A178VUG0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.