Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX95014 | Canola | nucleus | 84.17 | 88.64 |
| Bra018585.1-P | Field mustard | nucleus | 84.17 | 88.64 |
| VIT_14s0060g02660.t01 | Wine grape | nucleus | 61.87 | 58.5 |
| KRH33913 | Soybean | nucleus | 57.55 | 56.74 |
| KRG92877 | Soybean | nucleus | 55.4 | 55.8 |
| PGSC0003DMT400063671 | Potato | nucleus | 52.52 | 52.9 |
| Solyc01g099320.2.1 | Tomato | nucleus | 55.4 | 52.74 |
| VIT_01s0010g01910.t01 | Wine grape | cytosol | 55.4 | 50.66 |
| VIT_01s0010g01940.t01 | Wine grape | cytosol | 53.24 | 48.68 |
| AT2G47810.1 | Thale cress | nucleus | 48.92 | 42.5 |
| OQU88166 | Sorghum | cytosol, mitochondrion, nucleus | 44.6 | 42.47 |
| GSMUA_Achr8P21910_001 | Banana | cytosol | 35.97 | 42.37 |
| AT4G14540.1 | Thale cress | nucleus | 46.04 | 39.75 |
| TraesCS3D01G450000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 46.04 | 37.21 |
| TraesCS3A01G457000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 46.04 | 37.21 |
| HORVU3Hr1G098490.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 46.04 | 37.21 |
| Zm00001d042197_P001 | Maize | plastid | 43.88 | 36.75 |
| AT2G38880.8 | Thale cress | nucleus | 41.01 | 34.76 |
| AT5G47640.1 | Thale cress | nucleus | 46.76 | 34.21 |
| AT2G37060.2 | Thale cress | nucleus | 41.73 | 33.53 |
| AT3G53340.5 | Thale cress | nucleus | 42.45 | 33.52 |
| AT2G13570.1 | Thale cress | nucleus | 48.92 | 31.63 |
| AT1G21970.1 | Thale cress | nucleus | 42.45 | 24.79 |
| AT5G47670.3 | Thale cress | nucleus | 41.73 | 24.79 |
| AT5G23090.1 | Thale cress | cytosol, nucleus, plastid | 22.3 | 19.5 |
| AT5G08190.1 | Thale cress | cytosol, nucleus, plastid | 22.3 | 19.02 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | EntrezGene:837424 | UniProt:A0A178WJ11 | ProteinID:AAB70405.1 | ProteinID:AEE28385.1 |
| ArrayExpress:AT1G09030 | EnsemblPlantsGene:AT1G09030 | RefSeq:AT1G09030 | TAIR:AT1G09030 | RefSeq:AT1G09030-TAIR-G | EnsemblPlants:AT1G09030.1 |
| TAIR:AT1G09030.1 | ProteinID:BAH30281.1 | EMBL:BT029363 | UniProt:C0SUU0 | InterPro:CBFA_NFYB_domain | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046982 |
| InterPro:Histone-fold | InterPro:IPR009072 | Symbol:NF-YB4 | RefSeq:NP_172377.1 | UniProt:O04027 | ProteinID:OAP17082.1 |
| PFAM:PF00808 | PRINTS:PR00615 | ScanProsite:PS00685 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF88 | SUPFAM:SSF47113 |
| InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI00000A9DE3 | : | : | : | : |
Description
NFYB4Nuclear transcription factor Y subunit B-4 [Source:UniProtKB/Swiss-Prot;Acc:O04027]
Coordinates
chr1:-:2908611..2909032
Molecular Weight (calculated)
15742.3 Da
IEP (calculated)
7.509
GRAVY (calculated)
-0.963
Length
139 amino acids
Sequence
(BLAST)
(BLAST)
001: MTDEDRLLPI ANVGRLMKQI LPSNAKISKE AKQTVQECAT EFISFVTCEA SEKCHRENRK TVNGDDIWWA LSTLGLDNYA DAVGRHLHKY REAERERTEH
101: NKGSNDSGNE KETNTRSDVQ NQSTKFIRVV EKGSSSSAR
101: NKGSNDSGNE KETNTRSDVQ NQSTKFIRVV EKGSSSSAR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.