Factsheet for VIT_01s0010g01910.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0062g01190.t01
VIT_05s0094g00610.t01
VIT_09s0096g00130.t01
VIT_09s0096g00380.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09030.1	VIT_05s0062g01190.t01	AT3G59220.1	17322342
AT1G09030.1	VIT_05s0094g00610.t01	AT3G59220.1	17322342
AT1G09030.1	VIT_09s0096g00130.t01	AT3G59220.1	17322342
AT1G09030.1	VIT_09s0096g00380.t01	AT3G59220.1	17322342

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0010g01940.t01	Wine grape	cytosol	81.58	81.58
VIT_14s0060g02660.t01	Wine grape	nucleus	63.82	65.99
Bra018585.1-P	Field mustard	nucleus	50.66	58.33
CDX95014	Canola	nucleus	50.66	58.33
VIT_05s0020g01350.t01	Wine grape	nucleus	51.97	57.25
AT1G09030.1	Thale cress	nucleus	50.66	55.4
VIT_07s0104g01640.t01	Wine grape	nucleus	55.26	48.0
GSMUA_Achr8P21910_001	Banana	cytosol	34.21	44.07
VIT_06s0004g03490.t01	Wine grape	nucleus	37.5	42.86
OQU88166	Sorghum	cytosol, mitochondrion, nucleus	40.13	41.78
VIT_08s0040g03260.t01	Wine grape	nucleus	40.79	38.51
TraesCS3A01G457000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	42.11	37.21
HORVU3Hr1G098490.1	Barley	cytosol, mitochondrion, nucleus, plastid	42.11	37.21
Zm00001d042197_P001	Maize	plastid	40.13	36.75
TraesCS3D01G450000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	41.45	36.63
VIT_00s0259g00180.t01	Wine grape	nucleus	46.71	34.3
VIT_13s0019g03600.t01	Wine grape	nucleus	39.47	34.09
VIT_07s0031g01460.t01	Wine grape	nucleus	46.05	33.65
VIT_00s1287g00010.t01	Wine grape	nucleus	46.71	32.57
VIT_19s0015g00440.t01	Wine grape	nucleus	44.74	32.38
VIT_00s0956g00020.t01	Wine grape	nucleus	40.13	28.91
VIT_19s0015g00580.t01	Wine grape	nucleus	36.18	26.32
VIT_12s0057g01010.t01	Wine grape	nucleus	44.74	23.29
VIT_19s0015g00590.t01	Wine grape	cytosol, mitochondrion, nucleus	31.58	22.33
VIT_17s0000g04350.t01	Wine grape	cytosol, mitochondrion, nucleus	21.05	20.65

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100261324	wikigene:100261324	MapMan:15.5.51.2	InterPro:CBFA_NFYB_domain	ProteinID:CBI27496
ProteinID:CBI27496.3	UniProt:D7TAH3	EMBL:FN595754	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982	InterPro:Histone-fold
InterPro:IPR009072	EntrezGene:LOC100261324	wikigene:LOC100261324	PFAM:PF00808	PRINTS:PR00615	PANTHER:PTHR11064
PANTHER:PTHR11064:SF83	SUPFAM:SSF47113	UniParc:UPI0001982A07	ArrayExpress:VIT_01s0010g01910	EnsemblPlantsGene:VIT_01s0010g01910	EnsemblPlants:VIT_01s0010g01910.t01
RefSeq:XP_002269496	RefSeq:XP_002269496.1	:	:	:	:

Description

No Description!

Coordinates

chr1:+:18533069..18533527

Molecular Weight (calculated)

17265.4 Da

IEP (calculated)

5.844

GRAVY (calculated)

-0.738

Length

152 amino acids

Sequence
(BLAST)

001: MADEQDLLLP IANVGRIMKQ IPPPSAKISK EAKETMQECV SEFIKFVTGE ASEKCQRENR KTVNGDDICW ALSALGFDDH AEAIVRYLHK YREFERERPN
101: QRVQNEVDST RTKSGASDYK CIQAGKQTET PTPILLFEVT DQNGNRSLTK PF

Best Arabidopsis Sequence Match ( AT2G47810.1 )
(BLAST)

001: MAGNYHSFQN PIPRYQNYNF GSSSSNHQHE HDGLVVVVED QQQEESMMVK EQDRLLPIAN VGRIMKNILP ANAKVSKEAK ETMQECVSEF ISFVTGEASD
101: KCHKEKRKTV NGDDICWAMA NLGFDDYAAQ LKKYLHRYRV LEGEKPNHHG KGGPKSSPDN

Arabidopsis Description

NFYB5NF-YB5 [Source:UniProtKB/TrEMBL;Acc:A0A178VUG0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.