Factsheet for VIT_19s0015g00590.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0015g00580.t01	Wine grape	nucleus	70.7	72.73
VIT_06s0004g03490.t01	Wine grape	nucleus	26.05	42.11
VIT_00s0956g00020.t01	Wine grape	nucleus	37.67	38.39
VIT_14s0060g02660.t01	Wine grape	nucleus	26.05	38.1
VIT_05s0020g01350.t01	Wine grape	nucleus	23.26	36.23
VIT_07s0104g01640.t01	Wine grape	nucleus	28.84	35.43
VIT_08s0040g03260.t01	Wine grape	nucleus	25.58	34.16
VIT_13s0019g03600.t01	Wine grape	nucleus	27.91	34.09
VIT_01s0010g01910.t01	Wine grape	cytosol	22.33	31.58
Solyc02g032190.1.1	Tomato	cytosol, nucleus, plastid	13.95	31.58
Solyc10g009440.2.1	Tomato	plastid	33.95	30.67
Solyc05g005390.1.1	Tomato	nucleus, plastid	33.95	30.67
VIT_19s0015g00440.t01	Wine grape	nucleus	29.3	30.0
VIT_00s0259g00180.t01	Wine grape	nucleus	28.37	29.47
VIT_01s0010g01940.t01	Wine grape	cytosol	20.47	28.95
VIT_00s1287g00010.t01	Wine grape	nucleus	28.37	27.98
VIT_07s0031g01460.t01	Wine grape	nucleus	25.12	25.96
VIT_17s0000g04350.t01	Wine grape	cytosol, mitochondrion, nucleus	14.88	20.65
VIT_12s0057g01010.t01	Wine grape	nucleus	27.91	20.55

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100251442	wikigene:100251442	MapMan:15.5.51.2	InterPro:CBFA_NFYB_domain	ProteinID:CBI39744
ProteinID:CBI39744.3	UniProt:D7UAH9	EMBL:FN596747	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982	InterPro:Histone-fold
InterPro:IPR009072	EntrezGene:LOC100251442	wikigene:LOC100251442	PFAM:PF00808	PRINTS:PR00615	PANTHER:PTHR11064
PANTHER:PTHR11064:SF79	SUPFAM:SSF47113	UniParc:UPI00019857BD	ArrayExpress:VIT_19s0015g00590	EnsemblPlantsGene:VIT_19s0015g00590	EnsemblPlants:VIT_19s0015g00590.t01
unigene:Vvi.21730	RefSeq:XP_002268482	RefSeq:XP_002268482.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr19:+:8672303..8673863

Molecular Weight (calculated)

23868.9 Da

IEP (calculated)

5.566

GRAVY (calculated)

-0.756

Length

215 amino acids

Sequence
(BLAST)

001: METDGDQFHV YRRKFPPNSS NSALTLGSRS SNPINTMAGE GQQQGRREQE HYMPMAHLTR VMRRVLPAHA QISDQAKESI QECVCEFISF ITSEANDRSH
101: HELRKTITGE DIIAAMGKLG FDDYIEPLTL YLHRYRQAEN ERDGRLPLGG AMDYGSLGAT LSYGPPLPPP PPQTLNMGNQ EGLQDAAAIV THNYFEEEAG
201: GAGGSTSSRY PREDK

Best Arabidopsis Sequence Match ( AT5G47670.2 )
(BLAST)

001: MAEGSMRPPE FNQPNKTSNG GEEECTVREQ DRFMPIANVI RIMRRILPAH AKISDDSKET IQECVSEYIS FITGEANERC QREQRKTITA EDVLWAMSKL
101: GFDDYIEPLT LYLHRYRELE GERGVSCSAG SVSMTNGLVV KRPNGTMTEY GAYGPVPGIH MAQYHYRHQN GFVFSGNEPN SKMSGSSSGA SGARVEVFPT
201: QQHKY

Arabidopsis Description

NFYB6Nuclear transcription factor Y subunit B-6 [Source:UniProtKB/Swiss-Prot;Acc:Q84W66]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.