Factsheet for VIT_00s1287g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0259g00180.t01	Wine grape	nucleus	94.95	100.0
VIT_19s0015g00440.t01	Wine grape	nucleus	63.3	65.71
VIT_06s0004g03490.t01	Wine grape	nucleus	39.91	65.41
GSMUA_Achr2P13670_001	Banana	nucleus	50.0	65.27
GSMUA_Achr4P27850_001	Banana	nucleus	56.42	63.73
VIT_08s0040g03260.t01	Wine grape	nucleus	41.74	56.52
VIT_05s0020g01350.t01	Wine grape	nucleus	35.32	55.8
VIT_13s0019g03600.t01	Wine grape	nucleus	44.04	54.55
VIT_14s0060g02660.t01	Wine grape	nucleus	33.03	48.98
VIT_12s0057g01010.t01	Wine grape	nucleus	63.3	47.26
VIT_01s0010g01910.t01	Wine grape	cytosol	32.57	46.71
VIT_07s0104g01640.t01	Wine grape	nucleus	36.7	45.71
VIT_07s0031g01460.t01	Wine grape	nucleus	43.12	45.19
VIT_01s0010g01940.t01	Wine grape	cytosol	29.82	42.76
VIT_00s0956g00020.t01	Wine grape	nucleus	35.78	36.97
VIT_19s0015g00580.t01	Wine grape	nucleus	29.82	31.1
VIT_19s0015g00590.t01	Wine grape	cytosol, mitochondrion, nucleus	27.98	28.37
VIT_17s0000g04350.t01	Wine grape	cytosol, mitochondrion, nucleus	17.89	25.16

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100854000	wikigene:100854000	EntrezGene:100854372	wikigene:100854372	MapMan:15.5.51.2
UniProt:A5C0V6	EMBL:AM478196	ProteinID:CAN70795	ProteinID:CAN70795.1	InterPro:CBFA_NFYB_domain	ProteinID:CCB45194
ProteinID:CCB45194.1	ProteinID:CCB61128	ProteinID:CCB61128.1	EMBL:FN594980	EMBL:FN596578	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072
EntrezGene:LOC100854000	wikigene:LOC100854000	EntrezGene:LOC100854372	wikigene:LOC100854372	PFAM:PF00808	PRINTS:PR00615
ScanProsite:PS00685	PANTHER:PTHR11064	PANTHER:PTHR11064:SF87	SUPFAM:SSF47113	InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI00015223D8
ArrayExpress:VIT_00s1287g00010	EnsemblPlantsGene:VIT_00s1287g00010	EnsemblPlants:VIT_00s1287g00010.t01	unigene:Vvi.17260	RefSeq:XP_003635539	RefSeq:XP_003635539.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:38366950..38368416

Molecular Weight (calculated)

23360.6 Da

IEP (calculated)

8.674

GRAVY (calculated)

-0.703

Length

218 amino acids

Sequence
(BLAST)

001: MADSDNDSGG AQNNNSGGNV NSELSAREQD RLLPIANVSR IMKKALPANA KISKDAKETV QECVSEFISF VTGEASDKCQ REKRKTINGD DLLWAMMTLG
101: FEEYVEPLKV YLQKFREVEG EKTAVGRQVE KDGGGSSGDG GNGGVVNTGN FGSGYGAMQQ TMMMMGHHQH HQGHVYGSGS YHQMGSGSRP TSGGSSSGGG
201: AATGRPRLMW IMKMKMKK

Best Arabidopsis Sequence Match ( AT4G14540.1 )
(BLAST)

001: MADSDNDSGG HKDGGNASTR EQDRFLPIAN VSRIMKKALP ANAKISKDAK ETVQECVSEF ISFITGEASD KCQREKRKTI NGDDLLWAMT TLGFEDYVEP
101: LKVYLQKYRE VEGEKTTTAG RQGDKEGGGG GGGAGSGSGG APMYGGGMVT TMGHQFSHHF S

Arabidopsis Description

NFYB3Nuclear transcription factor Y subunit B-3 [Source:UniProtKB/Swiss-Prot;Acc:O23310]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.