Factsheet for VIT_14s0060g02660.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0062g01190.t01
VIT_05s0094g00610.t01
VIT_09s0096g00130.t01
VIT_09s0096g00380.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09030.1	VIT_05s0062g01190.t01	AT3G59220.1	17322342
AT1G09030.1	VIT_05s0094g00610.t01	AT3G59220.1	17322342
AT1G09030.1	VIT_09s0096g00130.t01	AT3G59220.1	17322342
AT1G09030.1	VIT_09s0096g00380.t01	AT3G59220.1	17322342

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063671	Potato	nucleus	63.27	67.39
Bra018585.1-P	Field mustard	nucleus	59.86	66.67
CDX95014	Canola	nucleus	59.86	66.67
Solyc01g099320.2.1	Tomato	nucleus	64.63	65.07
VIT_01s0010g01910.t01	Wine grape	cytosol	65.99	63.82
VIT_05s0020g01350.t01	Wine grape	nucleus	59.18	63.04
KRH33913	Soybean	nucleus	59.86	62.41
KRG92877	Soybean	nucleus	58.5	62.32
AT1G09030.1	Thale cress	nucleus	58.5	61.87
VIT_01s0010g01940.t01	Wine grape	cytosol	61.22	59.21
VIT_07s0104g01640.t01	Wine grape	nucleus	61.22	51.43
GSMUA_Achr8P21910_001	Banana	cytosol	37.41	46.61
VIT_06s0004g03490.t01	Wine grape	nucleus	40.14	44.36
OQU88166	Sorghum	cytosol, mitochondrion, nucleus	42.18	42.47
HORVU3Hr1G098490.1	Barley	cytosol, mitochondrion, nucleus, plastid	44.9	38.37
VIT_08s0040g03260.t01	Wine grape	nucleus	41.5	37.89
TraesCS3A01G457000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	44.22	37.79
Zm00001d042197_P001	Maize	plastid	42.18	37.35
TraesCS3D01G450000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	43.54	37.21
VIT_13s0019g03600.t01	Wine grape	nucleus	42.86	35.8
VIT_00s0259g00180.t01	Wine grape	nucleus	48.98	34.78
VIT_00s1287g00010.t01	Wine grape	nucleus	48.98	33.03
VIT_19s0015g00440.t01	Wine grape	nucleus	46.94	32.86
VIT_07s0031g01460.t01	Wine grape	nucleus	45.58	32.21
VIT_19s0015g00580.t01	Wine grape	nucleus	41.5	29.19
VIT_00s0956g00020.t01	Wine grape	nucleus	41.5	28.91
VIT_19s0015g00590.t01	Wine grape	cytosol, mitochondrion, nucleus	38.1	26.05
VIT_12s0057g01010.t01	Wine grape	nucleus	46.26	23.29
VIT_17s0000g04350.t01	Wine grape	cytosol, mitochondrion, nucleus	22.45	21.29

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100249483	wikigene:100249483	MapMan:15.5.51.2	InterPro:CBFA_NFYB_domain	ProteinID:CBI39480
ProteinID:CBI39480.3	UniProt:D7U9R6	EMBL:FN596746	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	EntrezGene:LOC100249483	wikigene:LOC100249483
PFAM:PF00808	PRINTS:PR00615	ScanProsite:PS00685	PANTHER:PTHR11064	PANTHER:PTHR11064:SF83	SUPFAM:SSF47113
InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI0001984A19	ArrayExpress:VIT_14s0060g02660	EnsemblPlantsGene:VIT_14s0060g02660	EnsemblPlants:VIT_14s0060g02660.t01	RefSeq:XP_002280365
RefSeq:XP_002280365.1	RefSeq:XP_019080620.1	:	:	:	:

Description

No Description!

Coordinates

chr14:+:2475206..2475649

Molecular Weight (calculated)

16545.7 Da

IEP (calculated)

7.342

GRAVY (calculated)

-0.712

Length

147 amino acids

Sequence
(BLAST)

001: MVDEQDHLLP IANVGRIMKQ ILPPRAKISK EGKETMQECA SEFISFVTGE ASDKCHKENR KTVNGDDICW ALSALGFDDY AEAILRYLHK YREFERERAN
101: QNKVGGSEDK DEASNCKYIQ AGKQTVIPPP LECRVIKKGN SSLTKPS

Best Arabidopsis Sequence Match ( AT2G47810.1 )
(BLAST)

001: MAGNYHSFQN PIPRYQNYNF GSSSSNHQHE HDGLVVVVED QQQEESMMVK EQDRLLPIAN VGRIMKNILP ANAKVSKEAK ETMQECVSEF ISFVTGEASD
101: KCHKEKRKTV NGDDICWAMA NLGFDDYAAQ LKKYLHRYRV LEGEKPNHHG KGGPKSSPDN

Arabidopsis Description

NFYB5NF-YB5 [Source:UniProtKB/TrEMBL;Acc:A0A178VUG0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.