Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc09g098160.2.1 | |
| Solyc09g098180.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G09030.1 | Solyc09g098160.2.1 | AT3G59220.1 | 17322342 |
| AT1G09030.1 | Solyc09g098180.2.1 | AT3G59220.1 | 17322342 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400063671 | Potato | nucleus | 86.99 | 92.03 |
| VIT_14s0060g02660.t01 | Wine grape | nucleus | 65.07 | 64.63 |
| Bra018585.1-P | Field mustard | nucleus | 55.48 | 61.36 |
| CDX95014 | Canola | nucleus | 55.48 | 61.36 |
| KRH33913 | Soybean | nucleus | 55.48 | 57.45 |
| KRG92877 | Soybean | nucleus | 53.42 | 56.52 |
| AT1G09030.1 | Thale cress | nucleus | 52.74 | 55.4 |
| Solyc04g009520.2.1 | Tomato | nucleus | 32.19 | 54.65 |
| Solyc09g074760.1.1 | Tomato | nucleus | 51.37 | 54.35 |
| Solyc01g067130.2.1 | Tomato | plastid | 48.63 | 51.45 |
| Solyc06g009010.1.1 | Tomato | nucleus | 59.59 | 48.88 |
| GSMUA_Achr8P21910_001 | Banana | cytosol | 34.25 | 42.37 |
| OQU88166 | Sorghum | cytosol, mitochondrion, nucleus | 41.1 | 41.1 |
| HORVU3Hr1G098490.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 42.47 | 36.05 |
| TraesCS3A01G457000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 42.47 | 36.05 |
| Solyc09g007290.2.1 | Tomato | nucleus | 31.51 | 35.66 |
| TraesCS3D01G450000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 41.78 | 35.47 |
| Zm00001d042197_P001 | Maize | plastid | 39.73 | 34.94 |
| Solyc04g054150.1.1 | Tomato | nucleus | 44.52 | 34.57 |
| Solyc04g049910.2.1 | Tomato | nucleus | 38.36 | 33.94 |
| Solyc11g012750.1.1 | Tomato | nucleus | 34.93 | 33.55 |
| Solyc02g032190.1.1 | Tomato | cytosol, nucleus, plastid | 21.23 | 32.63 |
| Solyc07g065500.1.1 | Tomato | nucleus | 40.41 | 32.42 |
| Solyc12g027650.1.1 | Tomato | nucleus | 43.84 | 30.77 |
| Solyc12g006120.1.1 | Tomato | nucleus | 41.1 | 29.7 |
| Solyc04g015060.1.1 | Tomato | nucleus | 36.99 | 22.78 |
| Solyc07g065580.1.1 | Tomato | nucleus | 26.03 | 21.35 |
| Solyc05g005390.1.1 | Tomato | nucleus, plastid | 34.25 | 21.01 |
| Solyc10g009440.2.1 | Tomato | plastid | 34.25 | 21.01 |
| Solyc05g015550.1.1 | Tomato | mitochondrion | 31.51 | 21.0 |
| Solyc07g065570.1.1 | Tomato | nucleus | 26.71 | 20.74 |
| Solyc05g005440.1.1 | Tomato | cytosol | 29.45 | 20.67 |
| Solyc05g005350.1.1 | Tomato | nucleus | 26.03 | 17.35 |
| Solyc05g005360.1.1 | Tomato | nucleus | 26.03 | 16.96 |
| Solyc05g005370.1.1 | Tomato | nucleus | 24.66 | 16.07 |
| Solyc06g069310.2.1 | Tomato | cytosol, mitochondrion, nucleus | 14.38 | 16.03 |
| Solyc03g114400.2.1 | Tomato | cytosol, nucleus, plastid | 14.38 | 15.91 |
| Solyc05g005380.1.1 | Tomato | plastid | 36.99 | 15.13 |
| Solyc02g032180.1.1 | Tomato | nucleus | 17.12 | 8.71 |
| Solyc12g038390.1.1 | Tomato | cytosol | 4.79 | 8.54 |
| Solyc05g005340.2.1 | Tomato | extracellular | 6.85 | 8.06 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | InterPro:CBFA_NFYB_domain | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | UniProt:K4B0W9 | PFAM:PF00808 |
| PRINTS:PR00615 | ScanProsite:PS00685 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF88 | SUPFAM:SSF47113 | EnsemblPlantsGene:Solyc01g099320.2 |
| EnsemblPlants:Solyc01g099320.2.1 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI0002768D67 | SEG:seg | : | : |
Description
Nuclear transcription factor Y subunit B-4 [Source:Projected from Arabidopsis thaliana (AT1G09030) UniProtKB/Swiss-Prot;Acc:O04027]
Coordinates
chr1:-:89611086..89611622
Molecular Weight (calculated)
16728.7 Da
IEP (calculated)
4.900
GRAVY (calculated)
-0.701
Length
146 amino acids
Sequence
(BLAST)
(BLAST)
001: MVDEHVKLVP IANVGRIMKQ ILPPTAKISK EAKETMQECA SEFISFVTGE ASDKCHKENR RTVNGDDICW ALSSLGFDNY AEVMLRYLYK LRDFERVRAN
101: QNKLGLNDDD NTDDDDDDGE ARRASTTSLA PLEINVMERV QRRRFN
101: QNKLGLNDDD NTDDDDDDGE ARRASTTSLA PLEINVMERV QRRRFN
001: MTDEDRLLPI ANVGRLMKQI LPSNAKISKE AKQTVQECAT EFISFVTCEA SEKCHRENRK TVNGDDIWWA LSTLGLDNYA DAVGRHLHKY REAERERTEH
101: NKGSNDSGNE KETNTRSDVQ NQSTKFIRVV EKGSSSSAR
101: NKGSNDSGNE KETNTRSDVQ NQSTKFIRVV EKGSSSSAR
Arabidopsis Description
NFYB4Nuclear transcription factor Y subunit B-4 [Source:UniProtKB/Swiss-Prot;Acc:O04027]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.