Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g005360.1.1 | Tomato | nucleus | 94.06 | 91.96 |
| Solyc05g005370.1.1 | Tomato | nucleus | 92.24 | 90.18 |
| PGSC0003DMT400035119 | Potato | nucleus | 57.53 | 78.26 |
| Solyc05g005340.2.1 | Tomato | extracellular | 31.05 | 54.84 |
| Solyc02g032180.1.1 | Tomato | nucleus | 66.67 | 50.87 |
| Solyc05g005440.1.1 | Tomato | cytosol | 43.84 | 46.15 |
| Solyc10g009440.2.1 | Tomato | plastid | 48.4 | 44.54 |
| Solyc05g005390.1.1 | Tomato | nucleus, plastid | 47.95 | 44.12 |
| Solyc11g012750.1.1 | Tomato | nucleus | 30.14 | 43.42 |
| Solyc04g015060.1.1 | Tomato | nucleus | 43.84 | 40.51 |
| Solyc04g009520.2.1 | Tomato | nucleus | 15.53 | 39.53 |
| Solyc02g032190.1.1 | Tomato | cytosol, nucleus, plastid | 15.98 | 36.84 |
| VIT_00s0956g00020.t01 | Wine grape | nucleus | 33.79 | 35.07 |
| KRH51197 | Soybean | nucleus | 35.62 | 34.98 |
| KRH01950 | Soybean | nucleus | 35.62 | 34.51 |
| CDY25952 | Canola | nucleus | 31.96 | 33.82 |
| CDY41063 | Canola | nucleus | 31.51 | 33.01 |
| AT5G47670.3 | Thale cress | nucleus | 35.16 | 32.91 |
| Solyc09g074760.1.1 | Tomato | nucleus | 20.55 | 32.61 |
| Bra017471.1-P | Field mustard | nucleus | 31.05 | 32.54 |
| Solyc05g015550.1.1 | Tomato | mitochondrion | 32.42 | 32.42 |
| Solyc01g067130.2.1 | Tomato | plastid | 20.09 | 31.88 |
| Solyc09g007290.2.1 | Tomato | nucleus | 18.72 | 31.78 |
| GSMUA_Achr3P04310_001 | Banana | nucleus | 30.59 | 31.6 |
| Bra024924.1-P | Field mustard | nucleus | 32.88 | 31.17 |
| CDY17715 | Canola | nucleus | 32.88 | 31.17 |
| Solyc04g049910.2.1 | Tomato | nucleus | 21.0 | 27.88 |
| Solyc06g009010.1.1 | Tomato | nucleus | 22.37 | 27.53 |
| Solyc07g065500.1.1 | Tomato | nucleus | 22.83 | 27.47 |
| Solyc05g005380.1.1 | Tomato | plastid | 43.38 | 26.61 |
| Solyc01g099320.2.1 | Tomato | nucleus | 17.35 | 26.03 |
| Solyc12g027650.1.1 | Tomato | nucleus | 23.74 | 25.0 |
| Solyc12g006120.1.1 | Tomato | nucleus | 22.83 | 24.75 |
| Solyc04g054150.1.1 | Tomato | nucleus | 20.55 | 23.94 |
| Solyc07g065580.1.1 | Tomato | nucleus | 16.44 | 20.22 |
| Solyc06g069310.2.1 | Tomato | cytosol, mitochondrion, nucleus | 11.87 | 19.85 |
| Solyc07g065570.1.1 | Tomato | nucleus | 16.44 | 19.15 |
| Solyc03g114400.2.1 | Tomato | cytosol, nucleus, plastid | 11.42 | 18.94 |
| Solyc12g038390.1.1 | Tomato | cytosol | 4.57 | 12.2 |
Protein Annotations
| EnsemblPlants:Solyc05g005350.1.1 | EnsemblPlantsGene:Solyc05g005350.1 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046982 | InterPro:CBFA_NFYB_domain |
| InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF20 | PFAM:PF00808 | SUPFAM:SSF47113 |
| UniParc:UPI0002766C48 | UniProt:K4BW66 | MapMan:15.5.51.2 | : | : | : |
Description
No Description!
Coordinates
chr5:+:281751..283619
Molecular Weight (calculated)
24436.1 Da
IEP (calculated)
4.179
GRAVY (calculated)
-0.677
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGGSGNGGF HSYRRSPQPT PADPPSSDVE MSLELPAHLN QEVDEIISQE QDEVIPNVAR IMHSTHPSHV KISDDAKRTM YHCMSEFICF VTYEANTHCQ
101: REQRNTITVE DVDWVINKFG FDDYIEPLPY YFPPNSEDDG GECGSLTRES LLKCPMVDTA SSSNITPYSV PPNFPMAHHH FVYPPPMGNG DMQGEASTSQ
201: YAGVSVDTDV ESPMEEDKE
101: REQRNTITVE DVDWVINKFG FDDYIEPLPY YFPPNSEDDG GECGSLTRES LLKCPMVDTA SSSNITPYSV PPNFPMAHHH FVYPPPMGNG DMQGEASTSQ
201: YAGVSVDTDV ESPMEEDKE
001: MERGGFHGYR KLSVNNTTPS PPGLAANFLM AEGSMRPPEF NQPNKTSNGG EEECTVREQD RFMPIANVIR IMRRILPAHA KISDDSKETI QECVSEYISF
101: ITGEANERCQ REQRKTITAE DVLWAMSKLG FDDYIEPLTL YLHRYRELEG ERGVSCSAGS VSMTNGLVVK RPNGTMTEYG AYGPVPGIHM AQYHYRHQNG
201: FVFSGNEPNS KMSGSSSGAS GARVEVFPTQ QHKY
101: ITGEANERCQ REQRKTITAE DVLWAMSKLG FDDYIEPLTL YLHRYRELEG ERGVSCSAGS VSMTNGLVVK RPNGTMTEYG AYGPVPGIHM AQYHYRHQNG
201: FVFSGNEPNS KMSGSSSGAS GARVEVFPTQ QHKY
Arabidopsis Description
NFYB6Nuclear transcription factor Y subunit B-6 [Source:UniProtKB/Swiss-Prot;Acc:Q84W66]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.