Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g005360.1.1 | Tomato | nucleus | 95.98 | 95.98 |
| Solyc05g005350.1.1 | Tomato | nucleus | 90.18 | 92.24 |
| PGSC0003DMT400035119 | Potato | nucleus | 54.46 | 75.78 |
| Solyc02g032180.1.1 | Tomato | nucleus | 68.3 | 53.31 |
| Solyc05g005340.2.1 | Tomato | extracellular | 29.46 | 53.23 |
| Solyc05g005440.1.1 | Tomato | cytosol | 43.75 | 47.12 |
| Solyc10g009440.2.1 | Tomato | plastid | 47.32 | 44.54 |
| Solyc05g005390.1.1 | Tomato | nucleus, plastid | 47.32 | 44.54 |
| Solyc11g012750.1.1 | Tomato | nucleus | 29.02 | 42.76 |
| Solyc04g015060.1.1 | Tomato | nucleus | 41.96 | 39.66 |
| Solyc02g032190.1.1 | Tomato | cytosol, nucleus, plastid | 16.52 | 38.95 |
| Solyc04g009520.2.1 | Tomato | nucleus | 14.73 | 38.37 |
| CDY25952 | Canola | nucleus | 31.7 | 34.3 |
| VIT_00s0956g00020.t01 | Wine grape | nucleus | 32.14 | 34.12 |
| KRH51197 | Soybean | nucleus | 33.48 | 33.63 |
| CDY41063 | Canola | nucleus | 31.25 | 33.49 |
| KRH01950 | Soybean | nucleus | 33.48 | 33.19 |
| Bra017471.1-P | Field mustard | nucleus | 30.8 | 33.01 |
| Solyc09g007290.2.1 | Tomato | nucleus | 18.75 | 32.56 |
| AT5G47670.3 | Thale cress | nucleus | 33.48 | 32.05 |
| Solyc05g015550.1.1 | Tomato | mitochondrion | 31.25 | 31.96 |
| Solyc09g074760.1.1 | Tomato | nucleus | 19.64 | 31.88 |
| Solyc01g067130.2.1 | Tomato | plastid | 19.2 | 31.16 |
| CDY17715 | Canola | nucleus | 31.25 | 30.3 |
| Bra024924.1-P | Field mustard | nucleus | 31.25 | 30.3 |
| GSMUA_Achr3P04310_001 | Banana | nucleus | 28.57 | 30.19 |
| Solyc04g049910.2.1 | Tomato | nucleus | 20.54 | 27.88 |
| Solyc05g005380.1.1 | Tomato | plastid | 44.2 | 27.73 |
| Solyc06g009010.1.1 | Tomato | nucleus | 21.88 | 27.53 |
| Solyc07g065500.1.1 | Tomato | nucleus | 21.88 | 26.92 |
| Solyc01g099320.2.1 | Tomato | nucleus | 16.07 | 24.66 |
| Solyc12g027650.1.1 | Tomato | nucleus | 22.77 | 24.52 |
| Solyc12g006120.1.1 | Tomato | nucleus | 21.88 | 24.26 |
| Solyc04g054150.1.1 | Tomato | nucleus | 20.09 | 23.94 |
| Solyc07g065580.1.1 | Tomato | nucleus | 15.62 | 19.66 |
| Solyc06g069310.2.1 | Tomato | cytosol, mitochondrion, nucleus | 10.71 | 18.32 |
| Solyc07g065570.1.1 | Tomato | nucleus | 15.18 | 18.09 |
| Solyc03g114400.2.1 | Tomato | cytosol, nucleus, plastid | 10.27 | 17.42 |
| Solyc12g038390.1.1 | Tomato | cytosol | 4.02 | 10.98 |
Protein Annotations
| EnsemblPlants:Solyc05g005370.1.1 | EnsemblPlantsGene:Solyc05g005370.1 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046982 | InterPro:CBFA_NFYB_domain |
| InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF20 | PFAM:PF00808 | SEG:seg |
| SUPFAM:SSF47113 | UniParc:UPI0002766C4A | UniProt:K4BW68 | MapMan:15.5.51.2 | : | : |
Description
No Description!
Coordinates
chr5:+:291616..294183
Molecular Weight (calculated)
24792.5 Da
IEP (calculated)
4.330
GRAVY (calculated)
-0.698
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNGNHLGGS GNGGFHSYGR SPQPTPADPP SPDTEMSLEL PAHLNQEVVE IISQEQDQVI PNVARIMQST HPSHVKISDD AKRTIYHCMS EFICFVTYEA
101: NAHCQREQRN TITVEDMDWV INKFGFDDYI EPLPYNFPPN SEDDGGECGS LTRESLLKRP MVDTASSSNI TSYNVPSNFP MAHHHFVYPP PMGNGDMQGR
201: ASTSQCAGAS VDTDVESPME EDKE
101: NAHCQREQRN TITVEDMDWV INKFGFDDYI EPLPYNFPPN SEDDGGECGS LTRESLLKRP MVDTASSSNI TSYNVPSNFP MAHHHFVYPP PMGNGDMQGR
201: ASTSQCAGAS VDTDVESPME EDKE
001: MERGAPFSHY QLPKSISELN LDQHSNNPTP MTSSVVVAGA GDKNNGIVVQ QQPPCVAREQ DQYMPIANVI RIMRKTLPSH AKISDDAKET IQECVSEYIS
101: FVTGEANERC QREQRKTITA EDILWAMSKL GFDNYVDPLT VFINRYREIE TDRGSALRGE PPSLRQTYGG NGIGFHGPSH GLPPPGPYGY GMLDQSMVMG
201: GGRYYQNGSS GQDESSVGGG SSSSINGMPA FDHYGQYK
101: FVTGEANERC QREQRKTITA EDILWAMSKL GFDNYVDPLT VFINRYREIE TDRGSALRGE PPSLRQTYGG NGIGFHGPSH GLPPPGPYGY GMLDQSMVMG
201: GGRYYQNGSS GQDESSVGGG SSSSINGMPA FDHYGQYK
Arabidopsis Description
NFYB9Nuclear transcription factor Y subunit B-9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFD8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.