Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY25952 | Canola | nucleus | 75.21 | 85.02 |
| CDY17715 | Canola | nucleus | 83.33 | 84.42 |
| Bra024924.1-P | Field mustard | nucleus | 83.33 | 84.42 |
| CDY41063 | Canola | nucleus | 74.79 | 83.73 |
| Bra017471.1-P | Field mustard | nucleus | 73.93 | 82.78 |
| PGSC0003DMT400034611 | Potato | mitochondrion | 35.04 | 68.33 |
| Solyc11g012750.1.1 | Tomato | nucleus | 42.73 | 65.79 |
| VIT_00s0956g00020.t01 | Wine grape | nucleus | 53.42 | 59.24 |
| KRH51197 | Soybean | nucleus | 51.28 | 53.81 |
| KRH01950 | Soybean | nucleus | 51.28 | 53.1 |
| PGSC0003DMT400035193 | Potato | cytosol, extracellular, nucleus | 14.96 | 53.03 |
| PGSC0003DMT400035117 | Potato | nucleus | 40.17 | 52.51 |
| GSMUA_Achr3P04310_001 | Banana | nucleus | 44.02 | 48.58 |
| PGSC0003DMT400079574 | Potato | cytosol | 27.35 | 47.41 |
| Solyc04g015060.1.1 | Tomato | nucleus | 47.44 | 46.84 |
| AT4G14540.1 | Thale cress | nucleus | 30.34 | 44.1 |
| AT1G21970.1 | Thale cress | nucleus | 43.59 | 42.86 |
| PGSC0003DMT400035125 | Potato | cytosol | 33.76 | 41.8 |
| AT1G09030.1 | Thale cress | nucleus | 24.79 | 41.73 |
| AT2G38880.8 | Thale cress | nucleus | 28.63 | 40.85 |
| AT2G47810.1 | Thale cress | nucleus | 27.78 | 40.62 |
| AT2G37060.2 | Thale cress | nucleus | 29.91 | 40.46 |
| AT3G53340.5 | Thale cress | nucleus | 30.34 | 40.34 |
| AT5G47640.1 | Thale cress | nucleus | 32.48 | 40.0 |
| Solyc05g005440.1.1 | Tomato | cytosol | 35.47 | 39.9 |
| PGSC0003DMT400084724 | Potato | endoplasmic reticulum, extracellular | 33.33 | 39.39 |
| PGSC0003DMT400035129 | Potato | nucleus | 37.61 | 39.29 |
| PGSC0003DMT400035119 | Potato | nucleus | 26.92 | 39.13 |
| Solyc05g015550.1.1 | Tomato | mitochondrion | 33.33 | 35.62 |
| Solyc05g005350.1.1 | Tomato | nucleus | 32.91 | 35.16 |
| PGSC0003DMT400035028 | Potato | nucleus | 17.95 | 34.15 |
| Solyc05g005360.1.1 | Tomato | nucleus | 32.48 | 33.93 |
| Solyc05g005370.1.1 | Tomato | nucleus | 32.05 | 33.48 |
| PGSC0003DMT400035121 | Potato | nucleus | 21.37 | 32.47 |
| AT2G13570.1 | Thale cress | nucleus | 28.21 | 30.7 |
| Solyc05g005380.1.1 | Tomato | plastid | 44.44 | 29.13 |
| Solyc05g005340.2.1 | Tomato | extracellular | 12.39 | 23.39 |
| AT5G08190.1 | Thale cress | cytosol, nucleus, plastid | 15.81 | 22.7 |
| AT5G23090.1 | Thale cress | cytosol, nucleus, plastid | 14.96 | 22.01 |
| Solyc02g032180.1.1 | Tomato | nucleus | 22.65 | 18.47 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | PDB:5G49 | EntrezGene:834818 | UniProt:A0A178UB79 | ProteinID:AED95548.1 |
| ProteinID:AED95549.1 | ProteinID:ANM69913.1 | ArrayExpress:AT5G47670 | EnsemblPlantsGene:AT5G47670 | RefSeq:AT5G47670 | TAIR:AT5G47670 |
| RefSeq:AT5G47670-TAIR-G | EnsemblPlants:AT5G47670.3 | EMBL:AY138461 | Unigene:At.49140 | ProteinID:BAB09093.1 | EMBL:BT004183 |
| InterPro:CBFA_NFYB_domain | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009738 | GO:GO:0009987 | GO:GO:0033613 | GO:GO:0043565 |
| GO:GO:0045893 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | Symbol:NF-YB6 | RefSeq:NP_001078727.1 |
| RefSeq:NP_001318754.1 | RefSeq:NP_199578.2 | ProteinID:OAO91158.1 | PFAM:PF00808 | PRINTS:PR00615 | ScanProsite:PS00685 |
| PANTHER:PTHR11064 | PANTHER:PTHR11064:SF79 | UniProt:Q84W66 | SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI00000AE141 |
| SEG:seg | : | : | : | : | : |
Description
NFYB6Nuclear transcription factor Y subunit B-6 [Source:UniProtKB/Swiss-Prot;Acc:Q84W66]
Coordinates
chr5:+:19314778..19316169
Molecular Weight (calculated)
26137.8 Da
IEP (calculated)
7.179
GRAVY (calculated)
-0.643
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MERGGFHGYR KLSVNNTTPS PPGLAANFLM AEGSMRPPEF NQPNKTSNGG EEECTVREQD RFMPIANVIR IMRRILPAHA KISDDSKETI QECVSEYISF
101: ITGEANERCQ REQRKTITAE DVLWAMSKLG FDDYIEPLTL YLHRYRELEG ERGVSCSAGS VSMTNGLVVK RPNGTMTEYG AYGPVPGIHM AQYHYRHQNG
201: FVFSGNEPNS KMSGSSSGAS GARVEVFPTQ QHKY
101: ITGEANERCQ REQRKTITAE DVLWAMSKLG FDDYIEPLTL YLHRYRELEG ERGVSCSAGS VSMTNGLVVK RPNGTMTEYG AYGPVPGIHM AQYHYRHQNG
201: FVFSGNEPNS KMSGSSSGAS GARVEVFPTQ QHKY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.