Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400035028 | Potato | nucleus | 55.19 | 69.11 |
| PGSC0003DMT400035119 | Potato | nucleus | 67.53 | 64.6 |
| Solyc05g005340.2.1 | Tomato | extracellular | 46.75 | 58.06 |
| PGSC0003DMT400035129 | Potato | nucleus | 81.82 | 56.25 |
| PGSC0003DMT400035125 | Potato | cytosol | 64.94 | 52.91 |
| PGSC0003DMT400079574 | Potato | cytosol | 29.87 | 34.07 |
| PGSC0003DMT400084724 | Potato | endoplasmic reticulum, extracellular | 33.12 | 25.76 |
| PGSC0003DMT400034611 | Potato | mitochondrion | 19.48 | 25.0 |
| VIT_00s0956g00020.t01 | Wine grape | nucleus | 30.52 | 22.27 |
| KRH51197 | Soybean | nucleus | 31.82 | 21.97 |
| KRH01950 | Soybean | nucleus | 31.82 | 21.68 |
| AT5G47670.3 | Thale cress | nucleus | 32.47 | 21.37 |
| CDY25952 | Canola | nucleus | 27.92 | 20.77 |
| PGSC0003DMT400035117 | Potato | nucleus | 23.38 | 20.11 |
| CDY41063 | Canola | nucleus | 27.27 | 20.1 |
| Bra017471.1-P | Field mustard | nucleus | 27.27 | 20.1 |
| Bra024924.1-P | Field mustard | nucleus | 29.87 | 19.91 |
| CDY17715 | Canola | nucleus | 29.87 | 19.91 |
| GSMUA_Achr3P04310_001 | Banana | nucleus | 26.62 | 19.34 |
| PGSC0003DMT400004366 | Potato | nucleus | 14.94 | 16.43 |
| PGSC0003DMT400029608 | Potato | nucleus | 14.94 | 16.08 |
| PGSC0003DMT400082465 | Potato | nucleus | 12.99 | 15.15 |
| PGSC0003DMT400057379 | Potato | nucleus | 16.23 | 14.45 |
| PGSC0003DMT400057066 | Potato | nucleus | 16.88 | 14.05 |
| PGSC0003DMT400058414 | Potato | nucleus | 12.34 | 13.97 |
| PGSC0003DMT400043176 | Potato | nucleus | 15.58 | 12.12 |
| PGSC0003DMT400037958 | Potato | nucleus | 13.64 | 11.8 |
| PGSC0003DMT400059368 | Potato | cytosol | 11.69 | 11.61 |
| PGSC0003DMT400010977 | Potato | nucleus | 13.64 | 10.34 |
| PGSC0003DMT400010436 | Potato | cytosol, mitochondrion, nucleus | 10.39 | 10.13 |
| PGSC0003DMT400095009 | Potato | nucleus | 12.34 | 9.95 |
| PGSC0003DMT400063256 | Potato | cytosol, nucleus, plastid | 9.74 | 9.43 |
| PGSC0003DMT400063671 | Potato | nucleus | 8.44 | 9.42 |
| PGSC0003DMT400035193 | Potato | cytosol, extracellular, nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400035121 | EnsemblPlantsGene:PGSC0003DMG400013504 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF20 | PGSC:PGSC0003DMG400013504 | SEG:seg |
| UniParc:UPI000295B748 | UniProt:M1B1U7 | MapMan:35.2 | : | : | : |
Description
Leafy cotyledon1 [Source:PGSC_GENE;Acc:PGSC0003DMG400013504]
Coordinates
chr5:-:8588443..8593150
Molecular Weight (calculated)
16902.3 Da
IEP (calculated)
4.389
GRAVY (calculated)
-0.785
Length
154 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNGNHVGGS GNGGFHSYRK SPQLTPAHSL PLREQRNTNT DEDVHWVINK FGFDDYIEPL PLYFPRCRED DGGECGSLIG ESLLKRPMVD TSSSCNITPY
101: HLPPNFPMAH HHFVYPPPVG NGDMQGDASN GSTSQCEVAS VDSDVEAPTE EDNE
101: HLPPNFPMAH HHFVYPPPVG NGDMQGDASN GSTSQCEVAS VDSDVEAPTE EDNE
001: MAEGSMRPPE FNQPNKTSNG GEEECTVREQ DRFMPIANVI RIMRRILPAH AKISDDSKET IQECVSEYIS FITGEANERC QREQRKTITA EDVLWAMSKL
101: GFDDYIEPLT LYLHRYRELE GERGVSCSAG SVSMTNGLVV KRPNGTMTEY GAYGPVPGIH MAQYHYRHQN GFVFSGNEPN SKMSGSSSGA SGARVEVFPT
201: QQHKY
101: GFDDYIEPLT LYLHRYRELE GERGVSCSAG SVSMTNGLVV KRPNGTMTEY GAYGPVPGIH MAQYHYRHQN GFVFSGNEPN SKMSGSSSGA SGARVEVFPT
201: QQHKY
Arabidopsis Description
NFYB6Nuclear transcription factor Y subunit B-6 [Source:UniProtKB/Swiss-Prot;Acc:Q84W66]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.