Factsheet for PGSC0003DMT400029608

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400026065
PGSC0003DMT400026068
PGSC0003DMT400065377

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47810.1	PGSC0003DMT400065377	AT1G28050.1	17138697
AT2G47810.1	PGSC0003DMT400026065	AT5G15840.1	17138697
AT2G47810.1	PGSC0003DMT400026068	AT5G15840.1	17138697

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g074760.1.1	Tomato	nucleus	90.91	94.2
PGSC0003DMT400058414	Potato	nucleus	58.74	61.76
PGSC0003DMT400037958	Potato	nucleus	74.83	60.11
PGSC0003DMT400063671	Potato	nucleus	53.85	55.8
CDY53021	Canola	nucleus	59.44	54.84
AT2G47810.1	Thale cress	nucleus	60.14	53.75
Bra000462.1-P	Field mustard	nucleus	58.04	53.21
CDX83320	Canola	nucleus	58.04	53.21
Bra004428.1-P	Field mustard	nucleus	56.64	52.26
PGSC0003DMT400082465	Potato	nucleus	46.15	50.0
CDX80136	Canola	nucleus	59.44	49.42
PGSC0003DMT400034611	Potato	mitochondrion	39.86	47.5
PGSC0003DMT400004366	Potato	nucleus	44.06	45.0
PGSC0003DMT400095009	Potato	nucleus	53.85	40.31
PGSC0003DMT400057066	Potato	nucleus	48.95	37.84
PGSC0003DMT400043176	Potato	nucleus	51.75	37.37
PGSC0003DMT400035193	Potato	cytosol, extracellular, nucleus	16.78	36.36
PGSC0003DMT400010977	Potato	nucleus	51.05	35.96
PGSC0003DMT400079574	Potato	cytosol	30.77	32.59
PGSC0003DMT400035117	Potato	nucleus	39.16	31.28
PGSC0003DMT400084724	Potato	endoplasmic reticulum, extracellular	37.76	27.27
PGSC0003DMT400035119	Potato	nucleus	30.07	26.71
PGSC0003DMT400035125	Potato	cytosol	32.87	24.87
PGSC0003DMT400057379	Potato	nucleus	28.67	23.7
PGSC0003DMT400035129	Potato	nucleus	34.27	21.88
PGSC0003DMT400059368	Potato	cytosol	23.08	21.29
PGSC0003DMT400010436	Potato	cytosol, mitochondrion, nucleus	22.38	20.25
PGSC0003DMT400063256	Potato	cytosol, nucleus, plastid	22.38	20.13
PGSC0003DMT400035028	Potato	nucleus	14.69	17.07
PGSC0003DMT400035121	Potato	nucleus	16.08	14.94

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:102587650	MapMan:15.5.51.2	InterPro:CBFA_NFYB_domain	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072
UniProt:M1AT41	PFAM:PF00808	EnsemblPlantsGene:PGSC0003DMG400011385	PGSC:PGSC0003DMG400011385	EnsemblPlants:PGSC0003DMT400029608	PRINTS:PR00615
ScanProsite:PS00685	PANTHER:PTHR11064	PANTHER:PTHR11064:SF88	SUPFAM:SSF47113	InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI000295A235
RefSeq:XP_015169880.1	:	:	:	:	:

Description

Ccaat-binding transcription factor subunit A [Source:PGSC_GENE;Acc:PGSC0003DMG400011385]

Coordinates

chr9:-:52279914..52280484

Molecular Weight (calculated)

16363.4 Da

IEP (calculated)

5.712

GRAVY (calculated)

-0.836

Length

143 amino acids

Sequence
(BLAST)

001: MVDTNNILGS FDSSEEGGFK EHEKLLPIAN VGRIMKHILP QNAKISKEGK ETMQECVSEF ISFVTGEASE KCHKEKRKTL NGDDVCWALG NLGFDDYVEP
101: LKRYLHRYRE LEGEKANQNK VDIGNKNEER EKNEFLLGRL YGP

Best Arabidopsis Sequence Match ( AT2G47810.1 )
(BLAST)

001: MAGNYHSFQN PIPRYQNYNF GSSSSNHQHE HDGLVVVVED QQQEESMMVK EQDRLLPIAN VGRIMKNILP ANAKVSKEAK ETMQECVSEF ISFVTGEASD
101: KCHKEKRKTV NGDDICWAMA NLGFDDYAAQ LKKYLHRYRV LEGEKPNHHG KGGPKSSPDN

Arabidopsis Description

NFYB5NF-YB5 [Source:UniProtKB/TrEMBL;Acc:A0A178VUG0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.