Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- peroxisome 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g009520.2.1 | Tomato | nucleus | 59.09 | 90.7 |
| PGSC0003DMT400004366 | Potato | nucleus | 75.76 | 71.43 |
| CDX74880 | Canola | nucleus | 65.91 | 61.27 |
| Bra005074.1-P | Field mustard | nucleus | 65.15 | 60.56 |
| TraesCS7A01G486400.1 | Wheat | cytosol | 45.45 | 56.6 |
| VIT_13s0019g03600.t01 | Wine grape | nucleus | 75.0 | 56.25 |
| TraesCS7B01G501400.1 | Wheat | cytoskeleton, cytosol, nucleus | 47.73 | 55.26 |
| KRH34567 | Soybean | nucleus | 71.97 | 54.6 |
| Zm00001d038397_P005 | Maize | nucleus | 72.73 | 53.93 |
| KRG92229 | Soybean | nucleus | 70.45 | 53.76 |
| AT2G38880.8 | Thale cress | nucleus | 66.67 | 53.66 |
| TraesCS5B01G454900.1 | Wheat | cytoskeleton, cytosol, nucleus | 48.48 | 52.46 |
| CDY07691 | Canola | nucleus | 65.91 | 52.41 |
| KXG22176 | Sorghum | nucleus | 71.21 | 52.22 |
| PGSC0003DMT400058414 | Potato | nucleus | 53.79 | 52.21 |
| CDY14422 | Canola | nucleus | 63.64 | 51.22 |
| Os05t0463800-02 | Rice | nucleus | 70.45 | 50.27 |
| Zm00001d010574_P001 | Maize | nucleus | 70.45 | 49.73 |
| GSMUA_Achr8P17450_001 | Banana | nucleus | 71.97 | 48.97 |
| TraesCS1D01G287500.1 | Wheat | nucleus | 65.91 | 47.8 |
| TraesCS1B01G297900.2 | Wheat | nucleus | 65.91 | 47.8 |
| TraesCS1A01G288500.3 | Wheat | nucleus | 65.15 | 47.25 |
| PGSC0003DMT400029608 | Potato | nucleus | 50.0 | 46.15 |
| PGSC0003DMT400057066 | Potato | nucleus | 61.36 | 43.78 |
| PGSC0003DMT400063671 | Potato | nucleus | 43.18 | 41.3 |
| CDX91501 | Canola | nucleus | 65.91 | 41.04 |
| PGSC0003DMT400034611 | Potato | mitochondrion | 36.36 | 40.0 |
| PGSC0003DMT400095009 | Potato | nucleus | 56.82 | 39.27 |
| PGSC0003DMT400010977 | Potato | nucleus | 59.85 | 38.92 |
| PGSC0003DMT400037958 | Potato | nucleus | 51.52 | 38.2 |
| PGSC0003DMT400035193 | Potato | cytosol, extracellular, nucleus | 18.94 | 37.88 |
| PGSC0003DMT400043176 | Potato | nucleus | 54.55 | 36.36 |
| HORVU1Hr1G071620.5 | Barley | nucleus, plastid | 65.15 | 34.13 |
| PGSC0003DMT400035117 | Potato | nucleus | 43.18 | 31.84 |
| PGSC0003DMT400079574 | Potato | cytosol | 30.3 | 29.63 |
| PGSC0003DMT400084724 | Potato | endoplasmic reticulum, extracellular | 40.15 | 26.77 |
| PGSC0003DMT400035119 | Potato | nucleus | 28.79 | 23.6 |
| PGSC0003DMT400035125 | Potato | cytosol | 33.33 | 23.28 |
| PGSC0003DMT400059368 | Potato | cytosol | 25.76 | 21.94 |
| PGSC0003DMT400010436 | Potato | cytosol, mitochondrion, nucleus | 25.76 | 21.52 |
| PGSC0003DMT400035129 | Potato | nucleus | 35.61 | 20.98 |
| PGSC0003DMT400057379 | Potato | nucleus | 27.27 | 20.81 |
| PGSC0003DMT400063256 | Potato | cytosol, nucleus, plastid | 25.0 | 20.75 |
| PGSC0003DMT400035028 | Potato | nucleus | 12.12 | 13.01 |
| PGSC0003DMT400035121 | Potato | nucleus | 15.15 | 12.99 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | InterPro:CBFA_NFYB_domain | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009414 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046982 | InterPro:Histone-fold |
| InterPro:IPR009072 | UniProt:M1D601 | PFAM:PF00808 | EnsemblPlantsGene:PGSC0003DMG400032552 | PGSC:PGSC0003DMG400032552 | EnsemblPlants:PGSC0003DMT400082465 |
| PRINTS:PR00615 | ScanProsite:PS00685 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF85 | SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS |
| UniParc:UPI000295EDE0 | SEG:seg | : | : | : | : |
Description
Transcription factor NF-Y CCAAT-binding [Source:PGSC_GENE;Acc:PGSC0003DMG400032552]
Coordinates
chr4:+:5168680..5173695
Molecular Weight (calculated)
14571.5 Da
IEP (calculated)
7.187
GRAVY (calculated)
-0.385
Length
132 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEVPASPGG GCGSHESGGE RSPQSNVREQ DRYLPIANIG RIMKKGLPAN AKIAKEAKDT VQECVSEFIS FITSEASDKC QKEKRKTING DDLVWSLTTL
101: GFEDYIEPLK AYLIRYREVI AVPPQLLMIS KL
101: GFEDYIEPLK AYLIRYREVI AVPPQLLMIS KL
001: MAESQAKSPG GCGSHESGGD QSPRSLHVRE QDRFLPIANI SRIMKRGLPA NGKIAKDAKE IVQECVSEFI SFVTSEASDK CQREKRKTIN GDDLLWAMAT
101: LGFEDYMEPL KVYLMRYREM EGDTKGSAKG GDPNAKKDGQ SSQNGQFSQL AHQGPYGNSQ AQQHMMVPMP GTD
101: LGFEDYMEPL KVYLMRYREM EGDTKGSAKG GDPNAKKDGQ SSQNGQFSQL AHQGPYGNSQ AQQHMMVPMP GTD
Arabidopsis Description
NFYB8Nuclear transcription factor Y subunit B-8 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.