Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07691 | Canola | nucleus | 88.41 | 87.35 |
| Bra005074.1-P | Field mustard | nucleus | 70.73 | 81.69 |
| CDX74880 | Canola | nucleus | 70.73 | 81.69 |
| AT2G38880.8 | Thale cress | nucleus | 74.39 | 74.39 |
| Solyc04g009520.2.1 | Tomato | nucleus | 37.2 | 70.93 |
| PGSC0003DMT400082465 | Potato | nucleus | 51.22 | 63.64 |
| TraesCS7A01G486400.1 | Wheat | cytosol | 37.2 | 57.55 |
| Solyc04g049910.2.1 | Tomato | nucleus | 55.49 | 55.15 |
| VIT_13s0019g03600.t01 | Wine grape | nucleus | 58.54 | 54.55 |
| CDX91501 | Canola | nucleus | 69.51 | 53.77 |
| CDY21888 | Canola | nucleus | 51.22 | 53.5 |
| KRH34567 | Soybean | nucleus | 56.71 | 53.45 |
| KRG92229 | Soybean | nucleus | 56.1 | 53.18 |
| CDY20167 | Canola | nucleus | 51.22 | 53.16 |
| TraesCS7B01G501400.1 | Wheat | cytoskeleton, cytosol, nucleus | 36.59 | 52.63 |
| Zm00001d038397_P005 | Maize | nucleus | 56.1 | 51.69 |
| KXG22176 | Sorghum | nucleus | 56.71 | 51.67 |
| CDY30123 | Canola | nucleus | 51.83 | 51.52 |
| CDY18462 | Canola | nucleus | 53.66 | 50.29 |
| TraesCS1A01G288500.3 | Wheat | nucleus | 55.49 | 50.0 |
| TraesCS1D01G287500.1 | Wheat | nucleus | 55.49 | 50.0 |
| TraesCS1B01G297900.2 | Wheat | nucleus | 54.88 | 49.45 |
| Os05t0463800-02 | Rice | nucleus | 55.49 | 49.19 |
| Zm00001d010574_P001 | Maize | nucleus | 55.49 | 48.66 |
| TraesCS5B01G454900.1 | Wheat | cytoskeleton, cytosol, nucleus | 35.98 | 48.36 |
| GSMUA_Achr8P17450_001 | Banana | nucleus | 56.1 | 47.42 |
| CDY18460 | Canola | nucleus | 53.66 | 45.36 |
| CDY72254 | Canola | nucleus | 51.22 | 45.16 |
| CDX75855 | Canola | nucleus | 51.22 | 45.16 |
| CDY41061 | Canola | nucleus | 50.61 | 45.11 |
| CDX95014 | Canola | nucleus | 35.98 | 44.7 |
| CDY53021 | Canola | nucleus | 42.07 | 44.52 |
| CDX82424 | Canola | nucleus | 51.22 | 44.44 |
| CDY25955 | Canola | nucleus | 50.61 | 44.38 |
| CDX83320 | Canola | nucleus | 42.07 | 44.23 |
| CDY28916 | Canola | nucleus | 50.0 | 44.09 |
| CDY40552 | Canola | nucleus | 49.39 | 43.78 |
| CDX79714 | Canola | nucleus | 56.1 | 41.44 |
| CDX80136 | Canola | nucleus | 41.46 | 39.53 |
| CDX73560 | Canola | nucleus | 51.83 | 37.12 |
| CDY46752 | Canola | nucleus | 59.76 | 36.7 |
| HORVU1Hr1G071620.5 | Barley | nucleus, plastid | 54.27 | 35.32 |
| CDX93117 | Canola | nucleus | 43.9 | 34.45 |
| CDX89608 | Canola | nucleus | 43.9 | 34.45 |
| CDY37212 | Canola | nucleus | 42.68 | 33.65 |
| CDX77785 | Canola | cytosol | 27.44 | 33.58 |
| CDX81449 | Canola | nucleus | 42.07 | 33.17 |
| CDX78169 | Canola | nucleus | 51.83 | 33.07 |
| CDY25952 | Canola | nucleus | 39.02 | 30.92 |
| CDY41063 | Canola | nucleus | 39.02 | 30.62 |
| CDY17715 | Canola | nucleus | 38.41 | 27.27 |
| CDY00411 | Canola | nucleus | 37.8 | 26.96 |
| CDY01304 | Canola | nucleus | 37.8 | 26.84 |
| CDX69967 | Canola | cytosol, nucleus, plastid | 24.39 | 24.24 |
| CDY21520 | Canola | cytosol, nucleus, plastid | 24.39 | 24.1 |
| CDX87185 | Canola | cytosol, nucleus, plastid | 23.78 | 23.08 |
| CDY16839 | Canola | cytosol, nucleus, plastid | 23.78 | 23.08 |
| CDY38832 | Canola | nucleus | 29.27 | 20.96 |
| CDY68650 | Canola | nucleus | 36.59 | 20.0 |
| CDY30639 | Canola | nucleus | 37.8 | 18.13 |
| CDY44761 | Canola | cytosol | 23.78 | 16.25 |
| CDY40760 | Canola | nucleus | 23.17 | 15.32 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | GO:A0A078FNH2 | UniProt:A0A078FNH2 | InterPro:CBFA_NFYB_domain | EnsemblPlants:CDY14422 |
| ProteinID:CDY14422 | ProteinID:CDY14422.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| GO:GO:0046982 | EnsemblPlantsGene:GSBRNA2T00079089001 | InterPro:Histone-fold | InterPro:IPR009072 | PFAM:PF00808 | PRINTS:PR00615 |
| ScanProsite:PS00685 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF85 | SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI0004EF1ED5 |
| SEG:seg | : | : | : | : | : |
Description
BnaC03g21730DBnaC03g21730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FNH2]
Coordinates
chrLK032043:-:233566..234922
Molecular Weight (calculated)
18072.5 Da
IEP (calculated)
5.028
GRAVY (calculated)
-0.201
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MANTTTSPDG DGGESGGSVR EHDRYLPIAN ISRIMKRALP PNGKIGKDAK DTVQECVSEF ISFITSEASD KCQKEKRKTV NGEDLLWAMS TLGFEDYLEP
101: LKVYLARYRE VSYISLLLLS SCYVRLILSF HLPVYVAETI LLLHGDSNNR DAAGGVSGEE LPVV
101: LKVYLARYRE VSYISLLLLS SCYVRLILSF HLPVYVAETI LLLHGDSNNR DAAGGVSGEE LPVV
001: MADTPSSPAG DGGESGGSVR EQDRYLPIAN ISRIMKKALP PNGKIGKDAK DTVQECVSEF ISFITSEASD KCQKEKRKTV NGDDLLWAMA TLGFEDYLEP
101: LKIYLARYRE VFETNSVLFI PWDWLLTHHL LMQLEGDNKG SGKSGDGSNR DAGGGVSGEE MPSW
101: LKIYLARYRE VFETNSVLFI PWDWLLTHHL LMQLEGDNKG SGKSGDGSNR DAGGGVSGEE MPSW
Arabidopsis Description
NF-YB1Nuclear factor Y, subunit B1 [Source:UniProtKB/TrEMBL;Acc:F4ITZ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.