Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G14540.1 | CDX93603 | AT1G07980.1 | 21798944 |
| AT4G14540.1 | CDX95106 | AT1G07980.1 | 21798944 |
| AT4G14540.1 | CDY06291 | AT1G07980.1 | 21798944 |
| AT4G14540.1 | CDY22709 | AT1G07980.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20167 | Canola | nucleus | 99.36 | 98.73 |
| CDY30123 | Canola | nucleus | 94.9 | 90.3 |
| AT4G14540.1 | Thale cress | nucleus | 84.71 | 82.61 |
| CDX82424 | Canola | nucleus | 93.63 | 77.78 |
| CDX75855 | Canola | nucleus | 91.72 | 77.42 |
| Solyc12g006120.1.1 | Tomato | nucleus | 78.98 | 61.39 |
| CDX74880 | Canola | nucleus | 54.78 | 60.56 |
| CDY41061 | Canola | nucleus | 70.06 | 59.78 |
| CDY28916 | Canola | nucleus | 70.7 | 59.68 |
| CDY40552 | Canola | nucleus | 70.06 | 59.46 |
| CDY25955 | Canola | nucleus | 70.7 | 59.36 |
| PGSC0003DMT400010977 | Potato | nucleus | 71.97 | 55.66 |
| CDY18462 | Canola | nucleus | 59.87 | 53.71 |
| CDY07691 | Canola | nucleus | 55.41 | 52.41 |
| CDX95014 | Canola | nucleus | 43.95 | 52.27 |
| CDY14422 | Canola | nucleus | 53.5 | 51.22 |
| CDY72254 | Canola | nucleus | 58.6 | 49.46 |
| CDY18460 | Canola | nucleus | 59.87 | 48.45 |
| CDX83320 | Canola | nucleus | 47.77 | 48.08 |
| CDY53021 | Canola | nucleus | 46.5 | 47.1 |
| CDX77785 | Canola | cytosol | 38.85 | 45.52 |
| CDX93117 | Canola | nucleus | 57.96 | 43.54 |
| CDX89608 | Canola | nucleus | 57.96 | 43.54 |
| CDX79714 | Canola | nucleus | 61.15 | 43.24 |
| VIT_12s0057g01010.t01 | Wine grape | nucleus | 80.25 | 43.15 |
| CDX80136 | Canola | nucleus | 47.13 | 43.02 |
| CDY37212 | Canola | nucleus | 56.69 | 42.79 |
| CDX81449 | Canola | nucleus | 56.05 | 42.31 |
| CDX73560 | Canola | nucleus | 60.51 | 41.48 |
| CDX91501 | Canola | nucleus | 55.41 | 41.04 |
| CDX78169 | Canola | nucleus | 60.51 | 36.97 |
| CDY46752 | Canola | nucleus | 61.78 | 36.33 |
| CDY41063 | Canola | nucleus | 47.13 | 35.41 |
| CDY25952 | Canola | nucleus | 46.5 | 35.27 |
| CDY17715 | Canola | nucleus | 45.86 | 31.17 |
| CDY00411 | Canola | nucleus | 45.22 | 30.87 |
| CDY01304 | Canola | nucleus | 45.22 | 30.74 |
| CDY38832 | Canola | nucleus | 36.94 | 25.33 |
| CDY68650 | Canola | nucleus | 43.31 | 22.67 |
| CDX69967 | Canola | cytosol, nucleus, plastid | 23.57 | 22.42 |
| CDY21520 | Canola | cytosol, nucleus, plastid | 23.57 | 22.29 |
| CDX87185 | Canola | cytosol, nucleus, plastid | 22.93 | 21.3 |
| CDY16839 | Canola | cytosol, nucleus, plastid | 22.93 | 21.3 |
| CDY30639 | Canola | nucleus | 43.95 | 20.18 |
| CDY44761 | Canola | cytosol | 22.93 | 15.0 |
| CDY40760 | Canola | nucleus | 22.29 | 14.11 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | GO:A0A078GAZ9 | UniProt:A0A078GAZ9 | InterPro:CBFA_NFYB_domain | EnsemblPlants:CDY21888 |
| ProteinID:CDY21888 | ProteinID:CDY21888.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| GO:GO:0046982 | EnsemblPlantsGene:GSBRNA2T00018200001 | InterPro:Histone-fold | InterPro:IPR009072 | PFAM:PF00808 | PRINTS:PR00615 |
| ScanProsite:PS00685 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF87 | SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI0004EECB06 |
| SEG:seg | : | : | : | : | : |
Description
BnaC01g35600DBnaC01g35600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GAZ9]
Coordinates
chrLK032125:-:526225..526937
Molecular Weight (calculated)
16830.7 Da
IEP (calculated)
6.678
GRAVY (calculated)
-0.738
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MADSDNDSGG HKDGGGASSR EQDRFLPIAN VSRIMKKALP ANAKISKDAK ETVQECVSEF ISFVTGEASD KCQREKRKTI NGDDLLWAMT TLGFEDYVEP
101: LKVYLQKYRE VEGERMTPGG RQGGKEGGGG SGGGMYGGVV TMGHHHQGHV YGGSGMN
101: LKVYLQKYRE VEGERMTPGG RQGGKEGGGG SGGGMYGGVV TMGHHHQGHV YGGSGMN
001: MADSDNDSGG HKDGGNASTR EQDRFLPIAN VSRIMKKALP ANAKISKDAK ETVQECVSEF ISFITGEASD KCQREKRKTI NGDDLLWAMT TLGFEDYVEP
101: LKVYLQKYRE VEGEKTTTAG RQGDKEGGGG GGGAGSGSGG APMYGGGMVT TMGHQFSHHF S
101: LKVYLQKYRE VEGEKTTTAG RQGDKEGGGG GGGAGSGSGG APMYGGGMVT TMGHQFSHHF S
Arabidopsis Description
NFYB3Nuclear transcription factor Y subunit B-3 [Source:UniProtKB/Swiss-Prot;Acc:O23310]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.