CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018668.1-P	Field mustard	nucleus	98.31	98.31
CDX95106	Canola	nucleus	87.01	84.62
CDY06291	Canola	nucleus	77.97	76.24
CDY22709	Canola	nucleus	77.97	75.82
AT1G07980.1	Thale cress	nucleus, plastid	67.8	58.25
GSMUA_Achr11P...	Banana	mitochondrion	23.73	39.62
KRH24892	Soybean	cytosol	17.51	38.75
KRH24891	Soybean	nucleus	33.33	27.7
KRH29946	Soybean	nucleus	34.46	26.07
Os03t0852300-01	Rice	plastid	33.9	19.8
VIT_06s0004g03030.t01	Wine grape	nucleus	32.77	13.65
Solyc06g016750.2.1	Tomato	nucleus	33.9	13.45
HORVU5Hr1G123050.4	Barley	nucleus	31.07	12.94
TraesCS5B01G538900.1	Wheat	nucleus	29.94	12.93
Zm00001d034872_P001	Maize	nucleus	25.42	12.26
KXG37104	Sorghum	nucleus, plastid	27.68	11.29
TraesCS5D01G557100.1	Wheat	nucleus	30.51	10.76
TraesCS4A01G326000.1	Wheat	nucleus	28.81	10.41
PGSC0003DMT400077500	Potato	nucleus	23.73	9.03

Protein Annotations

EnsemblPlants:CDX93603	EnsemblPlantsGene:GSBRNA2T00156283001	Gene3D:1.10.20.10	GO:A0A078E279	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046982	InterPro:CBFA_NFYB_domain	InterPro:Histone-fold	InterPro:IPR009072	PANTHER:PTHR10252
PANTHER:PTHR10252:SF54	PFAM:PF00808	ProteinID:CDX93603	ProteinID:CDX93603.1	SEG:seg	SUPFAM:SSF47113
UniParc:UPI0004EE427B	MapMan:15.5.50	:	:	:	:

Description

BnaA06g04450D

Coordinates

chrLK031876:+:903196..904429

Molecular Weight (calculated)

20111.8 Da

IEP (calculated)

8.985

GRAVY (calculated)

-0.927

Length

177 amino acids

Sequence
(BLAST)

001: MVSSKKPNQE KKPKNGDGLN TRSSGSKTKK KTANKAKLKD VAEKEPEVHE ISESSSSEGR RDEPKESNGV VVVEDAKMIR FPMNRIRRIM RSDNSAPQIM
101: QDAVFLVNKA TELFIERFSE EAYGSSVQDK KKFIHYKHLS SVVSNEERYE FLADCVPEKL KGEVALEEWE RSMTDVG

Best Arabidopsis Sequence Match ( AT1G07980.1 )
(BLAST)

001: MVSSKKPKEK KARSDVVVNK ASGRSKRSSG SRTKKTSNKV NIVKKKPEIY EISESSSSDS VEEAIRGDEA KKSNGVVSKR GNGKSVGIPT KTSKNREEDD
101: GGAEDAKIKF PMNRIRRIMR SDNSAPQIMQ DAVFLVNKAT EMFIERFSEE AYDSSVKDKK KFIHYKHLSS VVSNDQRYEF LADSVPEKLK AEAALEEWER
201: GMTDAG

Arabidopsis Description

NF-YC10At1g07980 [Source:UniProtKB/TrEMBL;Acc:Q9LN09]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.