Factsheet for Solyc06g016750.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400077500	Potato	nucleus	61.88	59.35
KRH24892	Soybean	cytosol	7.4	41.25
GSMUA_Achr11P...	Banana	mitochondrion	8.52	35.85
Bra018668.1-P	Field mustard	nucleus	13.45	33.9
CDX93603	Canola	nucleus	13.45	33.9
Bra031606.1-P	Field mustard	nucleus, plastid	12.78	31.32
CDY06291	Canola	nucleus	12.56	30.94
CDX95106	Canola	nucleus	12.56	30.77
AT1G07980.1	Thale cress	nucleus, plastid	14.13	30.58
KRH29946	Soybean	nucleus	15.02	28.63
CDY22709	Canola	nucleus	11.44	28.02
KRH24891	Soybean	nucleus	13.0	27.23
Os03t0852300-01	Rice	plastid	15.7	23.1
VIT_06s0004g03030.t01	Wine grape	nucleus	21.3	22.35
TraesCS5B01G538900.1	Wheat	nucleus	18.39	20.0
Zm00001d034872_P001	Maize	nucleus	15.25	18.53
HORVU5Hr1G123050.4	Barley	nucleus	17.49	18.35
TraesCS4A01G326000.1	Wheat	nucleus	18.61	16.94
TraesCS5D01G557100.1	Wheat	nucleus	17.71	15.74
KXG37104	Sorghum	nucleus, plastid	14.35	14.75

Protein Annotations

EnsemblPlants:Solyc06g016750.2.1	EnsemblPlantsGene:Solyc06g016750.2	Gene3D:1.10.20.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982	InterPro:CBFA_NFYB_domain
InterPro:Histone-fold	InterPro:IPR009072	ncoils:Coil	PANTHER:PTHR10252	PANTHER:PTHR10252:SF54	PFAM:PF00808
SEG:seg	SUPFAM:SSF47113	UniParc:UPI0002767470	UniProt:K4C4A2	MapMan:15.5.50	:

Description

No Description!

Coordinates

chr6:-:13108043..13121974

Molecular Weight (calculated)

51513.4 Da

IEP (calculated)

8.859

GRAVY (calculated)

-1.676

Length

446 amino acids

Sequence
(BLAST)

001: MPKKSNGNSD NHDRDEPEDF VIPSSSAESQ DADETDEESD DVQNVHKEYV SDTDKEDEEE EEEEKVESSK VGNTNSRGRE EDLEVQKKVY RRKGKKIVDG
101: CGLSESENLK IYTRKKKMIE KEKEVEEKER NVGAKIATSK NDYSEKNMNA KKEDKVNEGK TAKNNGDSSR GGKNEKRNNK DERREVEGET KLAKKGKSNG
201: GSSHGSVIKK EENKKKKRTD ERERERERER ERERERERQS AKKAKINGDS SQLKKEEKNM KKTQNKKEGD EEAEENLVKK SNSNGVASPA KKEKMKREKE
301: KKGKTNNGKV KDEAISNGTT KKNEEKKLKA KRKREDDEEE EDEKSESALY QFPHNRVHRI IKNENTEIRM LHEATFLVNK ATEKFLEIFC REAYSCSFLD
401: RKSYVGYNHL SSVVSKRPRF DFLSDFIPQK VRAEDALAEI PKSAET

Best Arabidopsis Sequence Match ( AT1G07980.1 )
(BLAST)

001: MVSSKKPKEK KARSDVVVNK ASGRSKRSSG SRTKKTSNKV NIVKKKPEIY EISESSSSDS VEEAIRGDEA KKSNGVVSKR GNGKSVGIPT KTSKNREEDD
101: GGAEDAKIKF PMNRIRRIMR SDNSAPQIMQ DAVFLVNKAT EMFIERFSEE AYDSSVKDKK KFIHYKHLSS VVSNDQRYEF LADSVPEKLK AEAALEEWER
201: GMTDAG

Arabidopsis Description

NF-YC10At1g07980 [Source:UniProtKB/TrEMBL;Acc:Q9LN09]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.