Factsheet for TraesCS5D01G557100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G538900.1	Wheat	nucleus	53.98	66.1
TraesCS4A01G326000.1	Wheat	nucleus	51.59	52.86
HORVU5Hr1G123050.4	Barley	nucleus	39.64	46.82
GSMUA_Achr11P...	Banana	mitochondrion	9.36	44.34
Os03t0852300-01	Rice	plastid	25.5	42.24
KRH24892	Soybean	cytosol	5.78	36.25
Zm00001d034872_P001	Maize	nucleus	24.9	34.06
Bra018668.1-P	Field mustard	nucleus	10.96	31.07
CDX95106	Canola	nucleus	11.16	30.77
CDX93603	Canola	nucleus	10.76	30.51
KXG37104	Sorghum	nucleus, plastid	25.9	29.95
CDY06291	Canola	nucleus	10.36	28.73
KRH29946	Soybean	nucleus	13.35	28.63
Bra031606.1-P	Field mustard	nucleus, plastid	10.16	28.02
KRH24891	Soybean	nucleus	11.16	26.29
AT1G07980.1	Thale cress	nucleus, plastid	10.76	26.21
CDY22709	Canola	nucleus	9.36	25.82
VIT_06s0004g03030.t01	Wine grape	nucleus	16.14	19.06
Solyc06g016750.2.1	Tomato	nucleus	15.74	17.71
PGSC0003DMT400077500	Potato	nucleus	13.55	14.62

Protein Annotations

EnsemblPlants:TraesCS5D01G557100.1	EnsemblPlantsGene:TraesCS5D01G557100	Gene3D:1.10.20.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0046982	InterPro:AT_hook_DNA-bd_motif	InterPro:CBFA_NFYB_domain	InterPro:Histone-fold
InterPro:IPR009072	PANTHER:PTHR10252	PANTHER:PTHR10252:SF54	PFAM:PF00808	PRINTS:PR00929	SEG:seg
SUPFAM:SSF47113	MapMan:15.5.50	:	:	:	:

Description

No Description!

Coordinates

chr5D:-:559856920..559860983

Molecular Weight (calculated)

52386.3 Da

IEP (calculated)

10.778

GRAVY (calculated)

-1.243

Length

502 amino acids

Sequence
(BLAST)

001: MAGKKPAAVS TAPSEGEESA VIPSSAAKRG PGRPKKDPVP AAASPGSTAK RGPGRPKKDP VPAAAASPGS KRGPGRPNKV PAPAGSGEGS APEPGKSEMG
101: KGEMEKAATP KKQGKGEMEK AAAPVKTEKG AKVATNKKKD KGEMAASPEK KEKAATPKKK DKGEEAATLP KKKDKGDKAA AVPEKKDKGE KAATKKKKKE
201: KGEIAAPPEK KEKGDKPANQ KKEKEKGDTA AAPKKKEKKG GEAAEPGSRS GKQEPSGEAG KPKPKPTPKK TKQQASDGAA KETPSKRKRD DAGEPQPQKA
301: AKKADKATPT KKKQASSGGA EKATTPSKTP QKAAKSANKS PGKAEKATPA KKQQPSGAAE KATPTKRKHG DLEPPKAAKS EQNGSSPAKK QKDKAAGAAP
401: VAAEPGICSF PMARVRLLMR DKDATIRSNN ETVFLVNKAS ELFLEAFAKD AYQNALKERK KSITYDNLST EVCNEKRYKF LSDFVPLRVT AGDALKAVVE
501: RS

Best Arabidopsis Sequence Match ( AT1G07980.1 )
(BLAST)

001: MVSSKKPKEK KARSDVVVNK ASGRSKRSSG SRTKKTSNKV NIVKKKPEIY EISESSSSDS VEEAIRGDEA KKSNGVVSKR GNGKSVGIPT KTSKNREEDD
101: GGAEDAKIKF PMNRIRRIMR SDNSAPQIMQ DAVFLVNKAT EMFIERFSEE AYDSSVKDKK KFIHYKHLSS VVSNDQRYEF LADSVPEKLK AEAALEEWER
201: GMTDAG

Arabidopsis Description

NF-YC10At1g07980 [Source:UniProtKB/TrEMBL;Acc:Q9LN09]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.