CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24892	Soybean	cytosol	26.07	76.25
KRH24891	Soybean	nucleus	49.15	53.99
Bra018668.1-P	Field mustard	nucleus	26.5	35.03
GSMUA_Achr11P...	Banana	mitochondrion	15.81	34.91
CDX93603	Canola	nucleus	26.07	34.46
CDY06291	Canola	nucleus	25.64	33.15
Bra031606.1-P	Field mustard	nucleus, plastid	25.21	32.42
CDX95106	Canola	nucleus	23.5	30.22
CDY22709	Canola	nucleus	23.5	30.22
AT1G07980.1	Thale cress	nucleus, plastid	26.07	29.61
Os03t0852300-01	Rice	plastid	27.35	21.12
Zm00001d034872_P001	Maize	nucleus	29.49	18.8
VIT_06s0004g03030.t01	Wine grape	nucleus	33.33	18.35
TraesCS5B01G538900.1	Wheat	nucleus	27.35	15.61
Solyc06g016750.2.1	Tomato	nucleus	28.63	15.02
KXG37104	Sorghum	nucleus, plastid	27.78	14.98
HORVU5Hr1G123050.4	Barley	nucleus	25.21	13.88
TraesCS5D01G557100.1	Wheat	nucleus	28.63	13.35
TraesCS4A01G326000.1	Wheat	nucleus	25.21	12.04
PGSC0003DMT400077500	Potato	nucleus	21.37	10.75

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100793738	MapMan:15.5.50	EMBL:ACUP02006837	InterPro:CBFA_NFYB_domain	EnsemblPlantsGene:GLYMA_11G148000
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0046982	InterPro:Histone-fold	UniProt:I1LL70	InterPro:IPR009072	EnsemblPlants:KRH29946
ProteinID:KRH29946	ProteinID:KRH29946.1	PFAM:PF00808	PANTHER:PTHR10252	PANTHER:PTHR10252:SF54	SUPFAM:SSF47113
UniParc:UPI000233C6C5	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:11418038..11420118

Molecular Weight (calculated)

26568.8 Da

IEP (calculated)

10.636

GRAVY (calculated)

-1.372

Length

234 amino acids

Sequence
(BLAST)

001: MTSSNSPKPE KKITKNTEIS KTQKKKTKNA ETPKTEKKKT KNAETPKTEK KKTKNAETPK TEKKKNAEIP KIEKKKTKSA EIPLTDGKTK RDREIAKEEN
101: KKKTKKPKLS NGTSKQRDEG SKKGVAEGKG EEGKMNVFPM NRIRTMIKGE DPDMRVSQEA LLAINNAVEK FLEQFSQEAY AFCVRDRKKC LSYDHLAHVV
201: SKQRRYDFLS DFVPERVKAE DALRERSAAG TGGH

Best Arabidopsis Sequence Match ( AT1G07980.1 )
(BLAST)

001: MVSSKKPKEK KARSDVVVNK ASGRSKRSSG SRTKKTSNKV NIVKKKPEIY EISESSSSDS VEEAIRGDEA KKSNGVVSKR GNGKSVGIPT KTSKNREEDD
101: GGAEDAKIKF PMNRIRRIMR SDNSAPQIMQ DAVFLVNKAT EMFIERFSEE AYDSSVKDKK KFIHYKHLSS VVSNDQRYEF LADSVPEKLK AEAALEEWER
201: GMTDAG

Arabidopsis Description

NF-YC10At1g07980 [Source:UniProtKB/TrEMBL;Acc:Q9LN09]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.